| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,872,257 – 5,872,368 |
| Length | 111 |
| Max. P | 0.534902 |
| Location | 5,872,257 – 5,872,368 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 75.36 |
| Mean single sequence MFE | -21.93 |
| Consensus MFE | -14.93 |
| Energy contribution | -15.93 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.15 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.534902 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5872257 111 + 23771897 UAACAUAA-AUCA-UAAAUUUAAAUAUCAUCAUCACAUUCUUUUC-AACAGCUUUGGAGAACGUUGGCAUCAAGUAUCGCACACUGGUGGGGAACUUAGCCCUCACAUUCUUCU ........-....-...............................-.........((((((.((.(((...((((.((.(((....))).)).)))).)))...)).)))))). ( -17.20) >DroSec_CAF1 79531 108 + 1 GAACAUAA-AUCA-UAAAUCUAAAUAUC---AUCACAUUCUUUUC-AACAGCUUUGGAGAACGUUGGCAUCAAGUAUCGCACACUGGUGGGGAACUUAGCUCUCACAUUCUCCU ........-....-..............---..............-.........((((((.((.(((...((((.((.(((....))).)).)))).)))...)).)))))). ( -18.20) >DroSim_CAF1 62912 108 + 1 GAACAUCA-AUCA-UAAAUCUAAAUAUC---AUCACAUUAUUUUC-AACAGCUUUGGAGAAUGUGGGCAUCAAGUAUCGCACAUUGGUGGGGAACUUAGCCCUCACAUUCUCCU ........-....-..............---..............-.........(((((((((((((...((((.((.(((....))).)).)))).))))..))))))))). ( -27.80) >DroEre_CAF1 83252 110 + 1 GAUCAUCAGAUCAUUAUAUCAUCAUAUC---AUCACUUCCUUUUU-AAUAGCUUUGGAGAACGUUGGCAUGAAGUAUCGCACCCUGGUGGGGAACUUAUCCCUCGCAGUCUCCU ((((....))))................---..............-.........(((((.((..((....((((.((.(((....))).)).))))..))..))...))))). ( -23.80) >DroYak_CAF1 86301 102 + 1 GACCA---------UAAAUCCUUAUAUA---AUCACUUCUAUUUGAAAUAGCUUUGGAGAACGUUGGCAUGAAGUAUCGCACUCUGGUGGGCAACUUGGCCCUCACUUUCUCCU .....---------..............---.....(((.....)))........((((((.((.(((...((((..(.(((....))).)..)))).)))...)).)))))). ( -19.40) >DroAna_CAF1 99482 98 + 1 ------------A-UUAAUCAAAGAAUA---AUAACCAUUUUCCCAUCCAGCUCUUGAGAAUGUGGGCGUCAAGUAUCGCACUUUGGUGGGCAACUUGUCCUUGGCUCUAGCCU ------------.-...(((((((....---....((((.(((.((.........)).))).))))(((........))).)))))))((((.....))))..(((....))). ( -25.20) >consensus GAACAU_A_AUCA_UAAAUCUAAAUAUC___AUCACAUUCUUUUC_AACAGCUUUGGAGAACGUUGGCAUCAAGUAUCGCACACUGGUGGGGAACUUAGCCCUCACAUUCUCCU .......................................................((((((.((.(((...((((.((.(((....))).)).)))).)))...)).)))))). (-14.93 = -15.93 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:49 2006