| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,871,757 – 5,871,872 |
| Length | 115 |
| Max. P | 0.721520 |
| Location | 5,871,757 – 5,871,872 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 78.55 |
| Mean single sequence MFE | -29.60 |
| Consensus MFE | -18.45 |
| Energy contribution | -19.65 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.721520 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5871757 115 + 23771897 GGUGCAGAGUACGAGAACUAGAGGGACUGCCGGAAAGUGAACAAAAGAAUCGGGGAAUCCCCAAAAAGCAAGAUGGCAGUUUCGAGAAUUGUUUUAUGUACAAUGUGCCCUACGA- ((..((..((((((((((....(..(((((((....(....).........((((...))))...........)))))))..).......))))).)))))..))..))......- ( -37.50) >DroSec_CAF1 79038 115 + 1 GGUGCAGAGUACGAGAACUGAAGGGACUGCCGGAAAGUGAACAAAAGAAUCGGGGAAUUCCCAAAAAGCAGGAUGGCAGUUUCGAGAAUUGUUUUAUGUACAAUGAGCCAUACGA- (((.((..((((((((((....(..(((((((....(....)..........(((....)))...........)))))))..).......))))).)))))..)).)))......- ( -33.50) >DroSim_CAF1 62412 115 + 1 GGUGCAGAGUACGAGAACUGGAGGGACUGCCGGAAAGUGAACAAAAGAAUCGGGGAAUUCCCAAAAAGCAGGAUGGCAGUUUCGAGAAUUGUUUUAUGUACAAUGAGCCAUACGA- (((.((..((((((((((....(..(((((((....(....)..........(((....)))...........)))))))..).......))))).)))))..)).)))......- ( -33.50) >DroEre_CAF1 82751 115 + 1 GGUGCAGAGUAAGAGAACUGGACGGAUUGCCGGAAAAUGAGCAAAAGAAUCGGGGCAUCCCCAAAAAGCAUGAUGGCAGUUUCGAGAAUUGUUUCAUGUACAAUAUGCCCUACAA- .((.(((..........))).))...((((((.....)).)))).......(((((((.........((((((.((((((((...)))))))))))))).....)))))))....- ( -26.54) >DroYak_CAF1 85801 115 + 1 GGUGCAAAGUAAGCGAACUCCAGGGAUUGCCAGAAAAUGAGCAAAAGAAUCGGGGCAUUCCCAAAAAGUCUGAUGGCAGUUACGAGAAUUGUUUCAUGUACAAUAUACCCUACAA- .(((((....((((((.(((..((((.((((.((...............))..)))).)))).....(((....)))......)))..))))))..)))))..............- ( -25.76) >DroPer_CAF1 87717 116 + 1 GGUGCCGCAUAGAAGAGCUAGAGUCUUUUCCAAAAGCAAAGCAAAUCGAACUUGGAAUCCCAAAAGACAAGCACGGAGUUUUUGACAGGUGUUCAAUGUACGAUGUCGAUUAUAAG .((((.((........))....(((((((......((...))...........((....)))))))))..))))...((..((((((..(((.......))).))))))..))... ( -20.80) >consensus GGUGCAGAGUACGAGAACUGGAGGGACUGCCGGAAAGUGAACAAAAGAAUCGGGGAAUCCCCAAAAAGCAGGAUGGCAGUUUCGAGAAUUGUUUUAUGUACAAUGUGCCCUACAA_ ((((((..(((...((((....(((((((((......(((.........)))(((....)))............))))))))).......))))....)))..))))))....... (-18.45 = -19.65 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:48 2006