Locus 2160

Sequence ID 3L_DroMel_CAF1
Location 5,869,324 – 5,869,420
Length 96
Max. P 0.958195
window3356

overview

Window 6

Location 5,869,324 – 5,869,420
Length 96
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 94.71
Mean single sequence MFE -29.61
Consensus MFE -25.94
Energy contribution -25.83
Covariance contribution -0.11
Combinations/Pair 1.09
Mean z-score -2.01
Structure conservation index 0.88
SVM decision value 1.49
SVM RNA-class probability 0.958195
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5869324 96 - 23771897
CAGUCUCAUCAUCACCGUCGUCAGUCAUCAUAUGCGCACAGCAUGUGUUCCACAAU---CGUCUCCUGGCUG----UGCGGCUGACGCGCCUCGCAAUCUGCU
...............((.((((((((..(((((((.....)))))))...((((..---((.....))..))----)).))))))))))....((.....)). ( -28.80)
>DroSec_CAF1 76595 96 - 1
CAGCCUCAUCAUCACCGUCGUCAGUCAUCAUAUGCGCACAGCAUGUGUUCCACAAU---CGUCUCCUGGCUG----UGCGGCUGACGCGCCUCGCAAUCUGCU
.(((...........((.((((((((..(((((((.....)))))))...((((..---((.....))..))----)).))))))))))...........))) ( -28.95)
>DroSim_CAF1 59969 96 - 1
CAGCAUCAUCAUCACCGUCGUCAGUCAUCAUAUGCGCACAGCAUGUGUUCCACAAU---CGUCUCCUGGCUG----UGCGGCUGACGCGCCUCGCAAUCUGCU
.((((..........((.((((((((..(((((((.....)))))))...((((..---((.....))..))----)).))))))))))..........)))) ( -30.45)
>DroEre_CAF1 80290 96 - 1
CAGCCUCAUCAUCACCGUCGUCAGUCAUCAUAUGCGCACAGCAUGUGUUCCGCAAU---CGUCUCCUGGCUG----UGCGGCUGACGCGCCUCGCAAUCUGCU
.(((...........((.((((((((..(((((((.....)))))))....(((..---.(((....)))..----)))))))))))))...........))) ( -30.95)
>DroYak_CAF1 83381 99 - 1
CAGCCUCAUCAUCACCGUCGUCAGUCAUCAUAUGCGCACAGCAUGUGUUCCACAAUCUUCGUCUCCUGGCUG----UACGGCUGACGCGCCUCGCAAUCUGCU
.(((...........((.((((((((..(((((((.....))))))).............(((....)))..----...))))))))))...........))) ( -26.85)
>DroAna_CAF1 96473 100 - 1
CGGCCUCAUCAUCGCCGUCGUCAGUCAUCAUAUGCGCCCAGCAUGUGUUCCACAAU---CAUCUCCUGGCUGACUCUACGGCUGACGCGCCUCGCAAUCUGCU
.(((..(.(((..(((((.((((((((.(((((((.....))))))).........---.......))))))))...)))))))).).)))..((.....)). ( -31.63)
>consensus
CAGCCUCAUCAUCACCGUCGUCAGUCAUCAUAUGCGCACAGCAUGUGUUCCACAAU___CGUCUCCUGGCUG____UGCGGCUGACGCGCCUCGCAAUCUGCU
.(((...........((.((((((((..(((((((.....))))))).............(((....))).........))))))))))...........))) (-25.94 = -25.83 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:46 2006