| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 602,166 – 602,268 |
| Length | 102 |
| Max. P | 0.918087 |
| Location | 602,166 – 602,268 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 76.50 |
| Mean single sequence MFE | -26.10 |
| Consensus MFE | -14.60 |
| Energy contribution | -15.00 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.56 |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.918087 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 602166 102 + 23771897 GGACCCCUGACUUCGUUCAGUGUACGCAGUUAUGGGGA-UGUACUCACAGAUACAUGUGAGAACUCCAAGUAGUUGGCCGCAGACACCGGCAAAAAAA---------AAAAA ((((((((((((.(((.......))).))))).)))).-.((.((((((......)))))).))))).........((((.......)))).......---------..... ( -32.20) >DroSec_CAF1 13336 102 + 1 GGAGCCCCGACUUCGCUCAGUGUACGCAGUCAUGGGGA-UGUACUCACAGAUACAUGUGAGAACUCCAAGUAGUUGGCCGCAGACACCGGCAAACAAA---------AAAAA ((((((((((((.((.........)).))))..)))).-....((((((......))))))..)))).....(((.((((.......)))).)))...---------..... ( -32.90) >DroEre_CAF1 15455 88 + 1 ---GUCCUGAUUUCGUUCAGUG---------AUGGGGA-UGUACUCACAGAUACAUGUGAGAACUCCAAGUAGUUGGCCACAGACACCGGCGAAAAA-----------AAAA ---(((((((......)))).)---------))..(((-.((.((((((......)))))).))))).....(((((.........)))))......-----------.... ( -23.50) >DroYak_CAF1 16089 102 + 1 GGAGUCCUGAUUUCGUUCAGUG---------AUGGGGA-UGUACUCACAGAUACAUGUGAGAACUCCAAGUAGUUGGCCACAGACACCGGCAAAAAAGCAAAAAAGCAAAAA ((((((((.(((.(.....).)---------)).))))-....((((((......))))))..)))).....(((((.........)))))......((......))..... ( -26.30) >DroAna_CAF1 20500 80 + 1 --------------GUAUAAUC---------AUGGGGAAGGUACUCACAGAUACAUGUGAGAAAUCCAAGUAGUUGGCCUCACAGACCGCCAAAAAAA---------AAUAA --------------........---------.(((((......((((((......))))))....((((....)))))))))................---------..... ( -15.60) >consensus GGAGCCCUGACUUCGUUCAGUG_________AUGGGGA_UGUACUCACAGAUACAUGUGAGAACUCCAAGUAGUUGGCCACAGACACCGGCAAAAAAA_________AAAAA ................................(((((....(.((((((......))))))).)))))....(((((.........)))))..................... (-14.60 = -15.00 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:33 2006