Locus 2159

Sequence ID 3L_DroMel_CAF1
Location 5,868,278 – 5,868,386
Length 108
Max. P 0.676865
window3355

overview

Window 5

Location 5,868,278 – 5,868,386
Length 108
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.29
Mean single sequence MFE -31.93
Consensus MFE -22.12
Energy contribution -20.77
Covariance contribution -1.36
Combinations/Pair 1.29
Mean z-score -1.33
Structure conservation index 0.69
SVM decision value 0.30
SVM RNA-class probability 0.676865
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5868278 108 - 23771897
CGAUGCACUCAUGUGCAUGUCCUGUGGUUAUUUGACAAUUGUUAACCCGUCUC--UGGGCUUUGUUCG----------ACUGAUUCCUCGGUGUUGCCAAGUGGCCAUAUGCCAAGCGUC
..((((((....))))))....((((((((((((.((((......((((....--)))).........----------(((((....))))))))).))))))))))))........... ( -31.10)
>DroPse_CAF1 85167 120 - 1
AGGAGCAUUCAUGUGCAUGUCCUGUGGUUAUUUGACAAUUGUUAACCCAUCCUAUAUGGUGUUGUUAGCAUAUCCUUCGUUGAUUUUUCAACGCUGCCAAGUGGCCAUAUGCCAGGCGUC
....((((....))))(((.((((((((((((((.((..(((((((.((((......))))..))))))).......((((((....)))))).)).)))))))))).....))))))). ( -35.30)
>DroEre_CAF1 79260 108 - 1
CAAUGCGCUCAUGUGCAUGUCCUGUGGUUAUUUGACAAUUGUUAACCCAUCUC--UUGGCUUUGUUCG----------ACUGAUUCCUUGGUGUUGCCAAGUGGCCAUAUGCCAAGCGUC
..((((((....)))))).....((((....(((((....))))).))))(.(--(((((..((..((----------........(((((.....)))))))..))...)))))).).. ( -27.30)
>DroYak_CAF1 82388 108 - 1
CGAUGCACUCAUGUGCAUGUCCUGUGGUUAUUUGACAAUUGUUAACCCAUCUC--UGGGCUUUGUUCG----------ACUGAUUCCUCGGUGUUGCCAAGUGGCCAUAUGCCAAGCGUC
..((((((....))))))....((((((((((((.((((......((((....--)))).........----------(((((....))))))))).))))))))))))........... ( -31.80)
>DroAna_CAF1 95417 117 - 1
U-AUGCAUUCAUGUGCAUGUCCUGUGGUUAUUUCACAAUUGUUAGCCCAUCUU--UAGGUCCUGCCAGCAUAUCCUUUUCAGGUUGUUUGGUGCUACCAAGUGGCCAUAUGCCAUACGUC
(-((((((....)))))))...(((((.....))))).(((.(((((((....--..((.....))((((...(((....))).))))))).)))).)))(((((.....)))))..... ( -30.80)
>DroPer_CAF1 83825 120 - 1
AGGAGCAUUCAUGUGCAUGUCCUGUGGUUAUUUGACAAUUGUUAACCCAUCCUAUAUGGUGUUGUUAGCAUAUCCUUCGUUGAUUUUUCAACGCUGCCAAGUGGCCAUAUGCCAGGCGUC
....((((....))))(((.((((((((((((((.((..(((((((.((((......))))..))))))).......((((((....)))))).)).)))))))))).....))))))). ( -35.30)
>consensus
CGAUGCACUCAUGUGCAUGUCCUGUGGUUAUUUGACAAUUGUUAACCCAUCUC__UUGGCUUUGUUAG__________ACUGAUUCCUCGGUGCUGCCAAGUGGCCAUAUGCCAAGCGUC
....((((....)))).((.(.((((((((((((.((......(((....((.....))....)))............(((((....)))))..)).)))))))))))).).))...... (-22.12 = -20.77 +  -1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:45 2006