| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,863,781 – 5,863,883 |
| Length | 102 |
| Max. P | 0.686367 |
| Location | 5,863,781 – 5,863,883 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 80.51 |
| Mean single sequence MFE | -30.98 |
| Consensus MFE | -20.97 |
| Energy contribution | -22.50 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.686367 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5863781 102 + 23771897 GUGGAGCAGGGGGCUG--UGGU----ACGUAUAGGAGCACGGAGGGGCGAUGCUCUGUGGAGCAUUGUCAUAUGUGGUUGGAAAUUUUGAAUCUGUUUGCGAGCUCUU (((..((((....)))--)..)----))....((((((.((.(((((((((((((....))))))))))......((((.((....)).))))..))).)).)))))) ( -33.80) >DroSec_CAF1 70969 102 + 1 GUGGGGCAGGGGGCUG--CGGU----ACGUAUAGGAGCACGGAGGGGCGAUGCUCUGUGGAGCAUUGUCAUAUGUGGUUGGAAAUUUUGAAUCUGUUUGCGAGCUCUU (((..((((....)))--)..)----))....((((((.((.(((((((((((((....))))))))))......((((.((....)).))))..))).)).)))))) ( -34.60) >DroSim_CAF1 54517 102 + 1 GCGGGGCAGGGGGCUG--CGGU----ACGUAUAGGAGCACGGAGGGGCGAUGCUCUGUGGGGCAUUGUCAUAUGUGGUUGGAAAUUUUGAAUCUGUUUGCGAGCUCUU (((..((((....)))--)...----.)))..((((((.((.(((((((((((((....))))))))))......((((.((....)).))))..))).)).)))))) ( -33.10) >DroEre_CAF1 74513 100 + 1 --------UGGGAAUGGGGGGCAUGGACAUAUAGGAGCACGGAGGGGCGAUGCUCUGUGGAGCAUUGUCAUAUGUGGUUGGAAAUUUUGAAUCUGUUUGCGAGCUCUU --------........((((((.(.(.((.(((((..((((....((((((((((....))))))))))...)))).(..((...))..).))))).))).))))))) ( -29.50) >DroYak_CAF1 77488 102 + 1 GGG----UUGGCGAUG--CGGUACGUAUGUAUAGGAGCACGGAGGGGCGCUGCUCUGUGGAGCAUUGUCAUAUGUGGUUGGAAAUUUUGAAUCUGUUUGCGAGCUCUU (((----((.((((.(--(((((((((((.(((((..(((((((.(....).)))))))...).))))))))))))(((.((....)).))))))))))).))))).. ( -31.10) >DroAna_CAF1 90929 78 + 1 -----------------------------GAUAGGAUCCGAGAGGGG-GCGCCUCUGUGGAGCAUUGUCAUAUGUGGUUGGAAAUUUUGAAUCUGUUUGCAACCCCUU -----------------------------(((((..(((((((((..-...))))).))))...)))))......(((((.((((.........)))).))))).... ( -23.80) >consensus G_G____AGGGGGCUG__CGGU____ACGUAUAGGAGCACGGAGGGGCGAUGCUCUGUGGAGCAUUGUCAUAUGUGGUUGGAAAUUUUGAAUCUGUUUGCGAGCUCUU ................................((((((.((.(((((((((((((....))))))))))......((((.((....)).))))..))).)).)))))) (-20.97 = -22.50 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:44 2006