| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,862,889 – 5,862,992 |
| Length | 103 |
| Max. P | 0.878672 |
| Location | 5,862,889 – 5,862,992 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 74.22 |
| Mean single sequence MFE | -21.06 |
| Consensus MFE | -9.41 |
| Energy contribution | -10.06 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.878672 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5862889 103 + 23771897 UUGCAC------CCCAAAAAACAAAAAAAAA-AUGGUGGCAACAAGCAAAUAUGUCAUUUGACAUGCUAAAUAUUUUGCC--UGCGACUUUAG-CAACACAAGGUAUGUUGCA- ...(((------(..................-..))))(((((.((((....((((....))))))))..((((((((..--(((.......)-))...))))))))))))).- ( -23.65) >DroSec_CAF1 70115 95 + 1 UCGCAC------UCCGAA--------AAAAA-AUUGUGGCAAGCAGCAAAUAUGUCAUUUGACAUGCUAAAUAUUUUGCC--UGCGACUUUAG-CAACACAAGGUAUGUUGCA- (((((.------..(((.--------.....-.))).((((((.......((((((....))))))........))))))--))))).....(-(((((.......)))))).- ( -22.26) >DroSim_CAF1 53663 95 + 1 UCGCAU------UCCGAA--------AAAAA-AUUGUGGCAAGCAGCAAAUAUGUCAUUUGACAUGCUAAAUAUUUUGCU--UGCGACUUUAG-CAACACAAGGUAUGUUGCA- (((...------..))).--------.....-...((.((((((((....((((((....)))))).........)))))--))).))....(-(((((.......)))))).- ( -24.32) >DroEre_CAF1 73611 92 + 1 U----U------CCCCCG-----A--AAAAA-CCUGUGGCAACCAGUAAAUAUGUCAUUUGACAUGCUAAAUAUUUUGCC--UGCGACUUUAC-CGACACAGGGUAUGUUGCA- .----.------......-----.--.....-.....(((((........((((((....)))))).........)))))--.(((((..(((-(.......)))).))))).- ( -21.43) >DroAna_CAF1 89775 94 + 1 UUCCGU------UGCCCA-----A--AAAAAAA------AAACUCGCAAAUAUGUCAUUUGACAUGCUAAAUAUUUUGCCUUUGUGACUUUAG-CACCACAAGGUAUGUUACCA ......------((((..-----.--.......------......(((((((((((....))))))........)))))..(((((.......-...)))))))))........ ( -14.00) >DroPer_CAF1 77137 104 + 1 AC-CAAAAAAAAAACACA-----AAAAAAAA-CCGCUGGAACCCCACAAAUAUGUCAUUUGACAUGCUAAAUAUUUUACC--AGCGACUUUGCUCUAAAAAAGGUGUGCGGUA- ..-..........((((.-----........-.((((((...........((((((....))))))............))--)))).((((........))))))))......- ( -20.70) >consensus UCGCAU______UCCAAA_____A__AAAAA_AUUGUGGCAACCAGCAAAUAUGUCAUUUGACAUGCUAAAUAUUUUGCC__UGCGACUUUAG_CAACACAAGGUAUGUUGCA_ .....................................(((((........((((((....)))))).........)))))...(((((...................))))).. ( -9.41 = -10.06 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:43 2006