Locus 2156

Sequence ID 3L_DroMel_CAF1
Location 5,862,313 – 5,862,419
Length 106
Max. P 0.875465
window3352

overview

Window 2

Location 5,862,313 – 5,862,419
Length 106
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 76.80
Mean single sequence MFE -25.40
Consensus MFE -15.25
Energy contribution -15.67
Covariance contribution 0.42
Combinations/Pair 1.14
Mean z-score -1.82
Structure conservation index 0.60
SVM decision value 0.89
SVM RNA-class probability 0.875465
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5862313 106 - 23771897
UGCGU-UGGCCAUGCCAUUUAUUUUAUUUGGCGAGAAUUUUUGUUUUUGCUAGUCCAACCUUGCCACCUUGCCACGG-AAAUAAAUGGUAUAUGGUAUUCCCCUUUCU
.....-..(((((((((((((((((...((((((((((....)))...((.((......)).))...)))))))..)-)))))))))))..)))))............ ( -28.20)
>DroPse_CAF1 77461 84 - 1
UGCGUUUGGGCAUGCCAUUUAUUUUAUUUGGCGAGAAUUUUUGUUUUUGCCCGUCCAGC---GGCACCUUU-CACGGAAUAUGAAUGG--------------------
.(((..(((((..((((...........))))((((((....)))))))))))..).))---....((.((-((.......)))).))-------------------- ( -20.90)
>DroSec_CAF1 69546 105 - 1
UGCGU-UGGCCAUGCCAUUUAUUUUAUUUGGCGAGAAUUUUUGUUUUUGCUAGUCCAACCUUGCCACCUUGCCACGG-AAAUAAAUGGUAUAGGG-GUUCCUCUUUCU
.((..-..)).((((((((((((((...((((((((((....)))...((.((......)).))...)))))))..)-)))))))))))))((((-....)))).... ( -28.00)
>DroSim_CAF1 53108 91 - 1
UGCGU-UGGCCAUGCCAUUUAUUUUAUUUGGCGAGAAUUUGUGUUUUUGCU--------------ACCUUGCCACGG-AAACAAAUGGUAUAGGG-GUUCCUCUUUCU
.((..-..)).(((((((((.((((...(((((((.....((......)).--------------..)))))))..)-))).)))))))))((((-....)))).... ( -24.00)
>DroEre_CAF1 73042 98 - 1
UGCGU-UGGCCAUGCCAUUUAUUUUAUUUGGCGAGAAUUCUUGUUUUUGCUAGUCCAAC---GCCACCUUGCCACGA-AAAUAAGUGGUUUAGGG-GUUCCCC----U
.((((-(((.(..((((...........))))((((((....))))))....).)))))---))......(((((..-......)))))..((((-....)))----) ( -30.40)
>DroPer_CAF1 76482 84 - 1
UGCGUUUGGGCAUGCCAUUUAUUUUAUUUGGCGAGAAUUUUUGUUUUUGCCCGUCCAGC---GGCACCUUU-CACGGAAUAUGAAUGG--------------------
.(((..(((((..((((...........))))((((((....)))))))))))..).))---....((.((-((.......)))).))-------------------- ( -20.90)
>consensus
UGCGU_UGGCCAUGCCAUUUAUUUUAUUUGGCGAGAAUUUUUGUUUUUGCUAGUCCAAC___GCCACCUUGCCACGG_AAAUAAAUGGUAUAGGG_GUUCC_C____U
.............(((((((((((.....(((((((((....)))))))))...............((.......)).)))))))))))................... (-15.25 = -15.67 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:42 2006