Locus 2155

Sequence ID 3L_DroMel_CAF1
Location 5,861,224 – 5,861,314
Length 90
Max. P 0.559040
window3351

overview

Window 1

Location 5,861,224 – 5,861,314
Length 90
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.27
Mean single sequence MFE -28.33
Consensus MFE -20.95
Energy contribution -21.40
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -1.04
Structure conservation index 0.74
SVM decision value 0.05
SVM RNA-class probability 0.559040
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5861224 90 + 23771897
C--ACCUCCU------------------GGUCCAUUGAAAUUUU-CGAAUAUUUUUGGAUGCAUGGAAGCUGUUUGCCAUGGCCAAAAGACAGGCGGCGGCUUACCGCA----CA-----
.--...((((------------------((((((..((.(((..-..))).))..))))).)).))).((.((..(((.(.(((........))).).)))..)).)).----..----- ( -25.10)
>DroPse_CAF1 76283 94 + 1
--------CA------------------GCUCCAUUGAAUUUUUCCGAAUAUUUUUGGAUGCAUGGAAGCUGUUUGCCAUGCCCAGAAGACAGGCGGCGGCUUACCAAAGCCACGCAGAG
--------((------------------(((((((.(......((((((....))))))..))))).)))))(((((..((((.........))))(.(((((....))))).)))))). ( -29.70)
>DroEre_CAF1 71910 90 + 1
C--ACCUCCG------------------GGUCCAUUGAAAUUUU-CGAAUAUUUUUGGAUGCAUGGAAGCUGUUUGCCAUGGCCAAAAGACAGGCGGCGGCUUACCGCA----CG-----
.--...((((------------------.(((((..((.(((..-..))).))..)))))...)))).((.((..(((.(.(((........))).).)))..)).)).----..----- ( -25.40)
>DroYak_CAF1 74863 92 + 1
AUGAGCACCA------------------GGUCCAUUGAAAUUUU-CGAAUAUUUUUGGAUGCAUGGAAGCUGUUUGCCAUGGCCAAAAGACAGGCGGCGGCUUACCGCA----CA-----
....((.(((------------------.(((((..((.(((..-..))).))..)))))...)))((((((((.(((.((.........)))))))))))))...)).----..----- ( -25.80)
>DroAna_CAF1 88087 108 + 1
C--AGUUCCAGUUCCAUGCGGAGGAGGCGGUCCAUUGAAAUUUU-CGAAUAUUUUUGGAUGCAUGGAAGCUGUUUGCCAUGCCCGAAAGACAGGCGGCGGCUUACCGCA----AA-----
.--..((((...(((....)))))))(((((((((.(.....((-((((....))))))..)))))((((((((.(((.((..(....).)))))))))))))))))).----..----- ( -34.30)
>DroPer_CAF1 75271 94 + 1
--------CA------------------GCUCCAUUGAAUUUUUCCGAAUAUUUUUGGAUGCAUGGAAGCUGUUUGCCAUGCCCAGAAGACAGGCGGCGGCUUACCAAAGCCACGCAGAG
--------((------------------(((((((.(......((((((....))))))..))))).)))))(((((..((((.........))))(.(((((....))))).)))))). ( -29.70)
>consensus
C__A_CUCCA__________________GGUCCAUUGAAAUUUU_CGAAUAUUUUUGGAUGCAUGGAAGCUGUUUGCCAUGCCCAAAAGACAGGCGGCGGCUUACCGCA____CA_____
.............................(((((..((.((((...)))).))..)))))...(((((((((((.(((.((..(....).))))))))))))).)))............. (-20.95 = -21.40 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:41 2006