Locus 2154

Sequence ID 3L_DroMel_CAF1
Location 5,861,053 – 5,861,148
Length 95
Max. P 0.666442
window3350

overview

Window 0

Location 5,861,053 – 5,861,148
Length 95
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 81.92
Mean single sequence MFE -32.27
Consensus MFE -19.52
Energy contribution -20.18
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.17
Structure conservation index 0.60
SVM decision value 0.28
SVM RNA-class probability 0.666442
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5861053 95 - 23771897
ACAAAAAGUGUCAUGGCGCAUGAAAAACUUCCUGCAACCGCUGUGGCUUGGCCA--AAA------GGCCUUCAGCC---UUCAGCCAGUCCUGUCCUGUCCGUGGC
.........(((((((((((.(((....))).)))....((((.((((.((((.--...------))))...))))---..))))............).))))))) ( -33.00)
>DroSec_CAF1 68277 95 - 1
ACAAAAAGUGUCAUGGCGCAUGAAAAACUUCCUGCAACGGCAGUGGCUUGGCCA--AAA------GGCCUUCAGCC---UUCAGCCAGUCCUGUCCUGUCCGUGGC
.........(((((((((((.(((....))).)))...(((((.((((.(((..--.((------(((.....)))---))..))))))))))))..).))))))) ( -35.50)
>DroSim_CAF1 51833 95 - 1
ACAAAAAGUGUCAUGGCGCAUGAAAAACUUCCUGCAACGGCAGUGGCUUGGCCA--AAA------GGCCUUCAGCC---UUCAGCCAGUCCUGUCCUGUCCGUGGC
.........(((((((((((.(((....))).)))...(((((.((((.(((..--.((------(((.....)))---))..))))))))))))..).))))))) ( -35.50)
>DroEre_CAF1 71753 83 - 1
ACAAAAAGUGUCAUGGCGCAUGAAAAACUUCCUGCAACGGGAGUGGCUUGGCCA--AAG------GCCCUUCAGCC---------------UGUCCUGACCGUGGC
.........(((((((.(((.(((....))).)))..(((((..((((.((((.--..)------)))....))))---------------..))))).))))))) ( -31.50)
>DroYak_CAF1 74704 85 - 1
ACAAAAAGUGUCAUGGCGCAUGAAAAACUUCCUGCAACGGCGGUGGCUUGGCCAGAAAG------GGCCUUCAGCC---------------UCUCCUGACCGUGGC
.........(((((((.(((.(((....))).)))..(((.((.((((.((((......------))))...))))---------------.)).))).))))))) ( -31.60)
>DroAna_CAF1 87901 102 - 1
ACAAAAAGUGUCAUGGCGCAUGAAAAACUUCCUGCA-CGGCAGCGGCUUGGCCC--CAGGCUCCAGGACUUCUUCCCUCUUCA-CCUCCCCCGUCAAUCCCGUGGC
.........(((((((.(((.(((....))).)))(-(((..(.((((((....--)))))).).(((.....))).......-......)))).....))))))) ( -26.50)
>consensus
ACAAAAAGUGUCAUGGCGCAUGAAAAACUUCCUGCAACGGCAGUGGCUUGGCCA__AAA______GGCCUUCAGCC___UUCA_CCAGUCCUGUCCUGUCCGUGGC
.........(((((((.(((.(((....))).))).........((((.((((............))))...)))).......................))))))) (-19.52 = -20.18 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:40 2006