Locus 2152

Sequence ID 3L_DroMel_CAF1
Location 5,853,608 – 5,853,710
Length 102
Max. P 0.861666
window3347

overview

Window 7

Location 5,853,608 – 5,853,710
Length 102
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 77.33
Mean single sequence MFE -23.75
Consensus MFE -17.23
Energy contribution -17.23
Covariance contribution 0.00
Combinations/Pair 1.18
Mean z-score -1.40
Structure conservation index 0.73
SVM decision value 0.83
SVM RNA-class probability 0.861666
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5853608 102 + 23771897
U----UUCCACACAAAACACAAAGAUUACGGGAGACAGGCAGCACAUUAACAUCAACCGA--GGCCACAAUCUCCACGGAAAAGGUGUCUGCUGUCUCCGGAAUAAAC
.----((((........(.....)......((((((((.(((.(((((....((....((--((......))))....))...))))))))))))))))))))..... ( -26.50)
>DroPse_CAF1 63571 86 + 1
A----U--CCCACAAACCACCAAGAUUACGGGAGACAGGCAGCGCAUUAACAUCAAG-GA---------------GCGGAAAAGGUGUCUGCUGUCUCCGGAAUGAAC
.----.--....................(.((((((((.(((.(((((....((...-..---------------...))...)))))))))))))))).)....... ( -21.70)
>DroEre_CAF1 64287 102 + 1
U----AUCCACACAAAACACAAAGAUUACGGGAGACAGGCAGCACAUUAACAUCAACCGA--GGCCACAAUCUCCACGGAAAAGGUGUCGGCUGUCUCCGGAAUAAAC
.----.......................(.((((((((.(.((((.......((....((--((......))))....))....)))).).)))))))).)....... ( -25.60)
>DroYak_CAF1 66644 102 + 1
U----UUGCGCACAAAACACAAAGAUUACGGCAGACAGGCAGCACAUUAACAUCAGCCGA--GGCCACAAUCUCCACGGAAAAGGUGUCUGCUGUCUCCGGAAUAAAC
.----.......................(((.((((((.(((.(((((........(((.--((.........)).)))....)))))))))))))))))........ ( -24.00)
>DroAna_CAF1 79672 102 + 1
GAAAACACUACACAAAACACAAAGUUUGUGGAAGACAGUCGGCGCAUUAACAUCAACCACUCCGGCACAAUCUCGACGGAAAAGGUGUCUGCUGUCUCCUGG------
..........((((((........))))))(.(((((((.(((((...............((((............))))....))))).))))))).)...------ ( -23.01)
>DroPer_CAF1 63823 86 + 1
A----U--CCCACAAACCACCAAGAUUACGGGAGACAGGCAGCGCAUUAACAUCAAG-GA---------------GCGGAAAAGGUGUCUGCUGUCUCCGGAAUGAAC
.----.--....................(.((((((((.(((.(((((....((...-..---------------...))...)))))))))))))))).)....... ( -21.70)
>consensus
U____UUCCACACAAAACACAAAGAUUACGGGAGACAGGCAGCACAUUAACAUCAACCGA__GGCCACAAUCUCCACGGAAAAGGUGUCUGCUGUCUCCGGAAUAAAC
............................(.((((((((.(((.(((((...................................)))))))))))))))).)....... (-17.23 = -17.23 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:37 2006