Locus 2151

Sequence ID 3L_DroMel_CAF1
Location 5,850,277 – 5,850,384
Length 107
Max. P 0.999735
window3346

overview

Window 6

Location 5,850,277 – 5,850,384
Length 107
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 89.84
Mean single sequence MFE -24.64
Consensus MFE -21.70
Energy contribution -22.18
Covariance contribution 0.48
Combinations/Pair 1.07
Mean z-score -2.91
Structure conservation index 0.88
SVM decision value 3.97
SVM RNA-class probability 0.999735
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5850277 107 + 23771897
UAUUUGGUUGGGUACGGGCCAAAUACAAUA--AAAAAAAAAAAAGCUGAGCAAAGUAAAAUAUUUGUUCAAAGUGUUUGAACUCGAAGCGCAGGCAAACGA-----AAUCAAAG
..(((((((..((....(((..........--..............((((((((........))))))))..((((((.......)))))).)))..))..-----))))))). ( -23.20)
>DroSec_CAF1 57458 104 + 1
UAUUUGGUUGGGUACGGGCCAAAUACAACA--AUAAA---AAAAGCUGAGCAAAGUAAAAUAUUUGUUCAAAGUGUUUGAACUAGAAGCGCAGGCAAGCGA-----AAUCAAAU
.((((((((..((....(((..........--.....---......((((((((........))))))))..((((((.......)))))).)))..))..-----)))))))) ( -23.70)
>DroSim_CAF1 41033 106 + 1
UAUUUGGUUGGGUACGGGCCAAAUACAAUA--AUAAA-AAAAAAGCUGAGCAAAGUAAAAUAUUUGUUCAAAGUGUUUGAACUAGAAGCGCAGGCAAGCGA-----AAUCAAAG
..(((((((..((....(((..........--.....-........((((((((........))))))))..((((((.......)))))).)))..))..-----))))))). ( -23.50)
>DroEre_CAF1 60901 110 + 1
UCUUUGGUUGGGUACGGGCCAAAAACAAAA---GAAA-AGAAAUGCUGAGCAAAGUAAAAUAUUUGUUCAAAGCGUUUGAACUCGAAGCGCAGGCAAACGAAUCAAAAUCAAAG
.((((((((.(((.((.(((..........---....-........((((((((........))))))))..((((((.......)))))).)))...)).)))..)))))))) ( -29.00)
>DroYak_CAF1 62897 108 + 1
UCUUCGCUUGGGUACGGGCCAAAUAUAAAAUGAAAAA-AAAAAUGCUGAGCAAAGUAAAAUAUUUGUUCAAAGUGUUUGAACUCGAAGCGCAGGCAAACGA-----AAUCAAAG
.....(((((.((.((((.(((((((....(....).-........((((((((........))))))))..)))))))..))))..)).)))))......-----........ ( -23.80)
>consensus
UAUUUGGUUGGGUACGGGCCAAAUACAAAA__AAAAA_AAAAAAGCUGAGCAAAGUAAAAUAUUUGUUCAAAGUGUUUGAACUCGAAGCGCAGGCAAACGA_____AAUCAAAG
.((((((((.....((.(((..........................((((((((........))))))))..((((((.......)))))).)))...))......)))))))) (-21.70 = -22.18 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:36 2006