Locus 2150

Sequence ID 3L_DroMel_CAF1
Location 5,847,932 – 5,848,052
Length 120
Max. P 0.825642
window3345

overview

Window 5

Location 5,847,932 – 5,848,052
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 80.25
Mean single sequence MFE -31.42
Consensus MFE -20.26
Energy contribution -20.90
Covariance contribution 0.64
Combinations/Pair 1.28
Mean z-score -1.96
Structure conservation index 0.64
SVM decision value 0.70
SVM RNA-class probability 0.825642
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5847932 120 + 23771897
GACUCACCAAUCAGCUGUGGCAUAUGCAUGCUUCUUCAACGGAACCCCCUUACACGCCCUUCACAAUGCCUACGAAGAGGCAUGCAUCGCCAAACUUUUUGGAAUCACAAAGCCCCGCUU
......((((..((...((((..((((((((((((((...((.....))......((..........))....)))))))))))))).))))..))..)))).......((((...)))) ( -35.40)
>DroSec_CAF1 55199 120 + 1
GACUCACUUAUCAGCUGUGACAUAUGCAUGUUUCUUCAACGGAACCCCCUUCCACGCCCUUCACAAUGCCUACGAAGAGGCAUGCAUGGCCAAACUUUUUGGACUUACGAAACCCCGUUU
...((((.........))))..(((((((((((((((...((((.....))))..((..........))....))))))))))))))).((((.....))))....(((......))).. ( -29.50)
>DroSim_CAF1 38686 120 + 1
GACUCACUUAUCAGCUGUGGCAUAUGCAUGUUUCUUCAACGGAACCCCCUUCCACGCCCUUCACAAUGCCUACGAAGAGGCAUGCAUCGCUAAACUUUUUGGACUCACGAAACCCCGUUU
((.((.......((...((((..((((((((((((((...((((.....))))..((..........))....)))))))))))))).))))..)).....)).))(((......))).. ( -28.50)
>DroYak_CAF1 60568 120 + 1
GACUCACUUAUCGGCUGUGGCAUAUGCAUGUUUCUUCAACGGAACCCCCUUCCACGCCCUUCACAAUGCCUACGAAGAGUCAUGCAUUAGUAAGCUUUUUGGAAUCACAAAACCGCGCUU
............(((.((((...(((((((.((((((...((((.....))))..((..........))....)))))).))))))).........(((((......)))))))))))). ( -27.90)
>DroAna_CAF1 74219 120 + 1
AACCCACAUGGCGGCCGUGGCCUAUGGGUGCUUCUUCAACGGCACUCCGGUCCACUGUCUGCACAAGUCCUAUGAACUGGCAACCAUUGACAAGCUAUACGGCCUGACCCGCCCAAAGAU
.........(((((....((((((((((((((........)))))....(((...((..(((.((..((....))..)))))..))..)))...))))).))))....)))))....... ( -35.80)
>consensus
GACUCACUUAUCAGCUGUGGCAUAUGCAUGUUUCUUCAACGGAACCCCCUUCCACGCCCUUCACAAUGCCUACGAAGAGGCAUGCAUCGCCAAACUUUUUGGACUCACAAAACCCCGCUU
...((((.........))))...((((((((((((((...((((.....))))..((..........))....)))))))))))))).........(((((......)))))........ (-20.26 = -20.90 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:35 2006