| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 599,714 – 599,818 |
| Length | 104 |
| Max. P | 0.677862 |
| Location | 599,714 – 599,818 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.23 |
| Mean single sequence MFE | -18.55 |
| Consensus MFE | -4.68 |
| Energy contribution | -7.44 |
| Covariance contribution | 2.76 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.25 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.677862 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 599714 104 - 23771897 ACUAUAU-----AUCAUGGAUCCAUUUUCAUGAAUUGCAUAACCAAUCUUCCAUAUAGAAAUAUGUACCUAUCAGUAACCUUAAACUGUCAUAGUUUUAAGAA-------UGGUUU---- .......-----.(((((((......))))))).......(((((.((((..(((((....)))))..((((((((........))))..))))....)))).-------))))).---- ( -20.20) >DroSec_CAF1 11080 120 - 1 AUUAUAUAACAUAUCAUGGAUCCAUUUUCAUGAAUUGCAUAACCAAUCUUCCACAUACAAAUAAAUACCUUUCAGUAACCUUAAACUGUCAUAGUUUUAAGAAACCCGGAGGGUCUUAUG .............(((((((......)))))))....(((((...(((((((.............(((......)))..(((((((((...))).))))))......))))))).))))) ( -19.50) >DroSim_CAF1 9394 120 - 1 AUUAUAUAACAAAUCAUGGAUCCAUUUUCAUGAAUUGCAUAACCAAUCUUCCACAUACAAAUAAAUACCUUUCAGUAACCUUAAACUGUCAUAGUUUUAAGAAACCCGGAGGGUCUUAUG .........(((.(((((((......))))))).)))(((((...(((((((.............(((......)))..(((((((((...))).))))))......))))))).))))) ( -21.10) >DroEre_CAF1 12902 106 - 1 ---GUAU-----AUCAAAGAUCCAUUUUCAUAAAUUUCACAACCAAUUUUCCAUUUAAAAU------GCCACCAGUAACCUUAAACUGUCCUAGUUUAAAAAAGCUCGGAGGGUCUUAUG ---....-----....(((((((......................................------.....((((........))))(((.(((((....))))).))))))))))... ( -17.70) >DroYak_CAF1 13340 104 - 1 ----UAU-----AGUCAAGAUCCAUUUUCAUUAAUUUCACAGCCA-UCUUCCCUAUAAAAG------UCUAUCUGUAACCCUAAACUGUCCUAGUUUUAAAAAGUUUGGAGGGUCCUCAG ----...-----......(((((...............((((...-.(((........)))------.....))))....(((((((...............))))))).)))))..... ( -14.26) >consensus A_UAUAU_____AUCAUGGAUCCAUUUUCAUGAAUUGCAUAACCAAUCUUCCAUAUAAAAAUA__UACCUAUCAGUAACCUUAAACUGUCAUAGUUUUAAGAAACCCGGAGGGUCUUAUG .............(((((((......)))))))............(((((((....................((((........)))).....((((....))))..)))))))...... ( -4.68 = -7.44 + 2.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:32 2006