| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,846,961 – 5,847,081 |
| Length | 120 |
| Max. P | 0.815597 |
| Location | 5,846,961 – 5,847,081 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.83 |
| Mean single sequence MFE | -28.93 |
| Consensus MFE | -27.62 |
| Energy contribution | -27.56 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.815597 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5846961 120 - 23771897 UCUCCAUAAACGGGAUCCCAAAUGCCAAAGACACAAGCUUCCACAACAUUUGGCAUUUCAGCGAUGACACUUUCAAUCUCGCUGGGGUAAUACAUGAUGGUCUGAUACUUGAGCAUAUCC ............(((((((((((((((((...................))))))))))(((((((((.....)))...))))))))).........(((.((........)).))))))) ( -28.11) >DroSec_CAF1 54248 120 - 1 UCUCCAUUAACUGGAUCCCAAAUGCCAAAGACACAAGCCUCCACAACAUUUGGCAUUUCGGCGAUGACACUUUCAAUCUCGCUGGGGUAAUACAUAAUGGUCUGAUACUUGAGCAUAUCA ...((((((.....(((((((((((((((...................)))))))))).((((((((.....)))...))))))))))......))))))...((((........)))). ( -28.71) >DroSim_CAF1 37695 120 - 1 UCUCCAUUAACUGGAUCCCAAAUGCCAAAGACACAAGCCUCCACAACAUUUGGCAUUUCGGCGAUGACACUUUCAAUCUCGCUGGGGUAAUACAUGAUGGUCUGAUACUUGAGCAUAUCC ((.((((((.....(((((((((((((((...................)))))))))).((((((((.....)))...))))))))))......))))))...))............... ( -28.31) >DroYak_CAF1 59615 120 - 1 UCUCCAUUCACUGGAUCCCAAAUGCCAAAGACACAGGCCUCCACAACAUUUGGCAUUUCAGCGAUGACACUUUCAAUCUCGCUGGGAUAAUACAUGAUGGUCUGAUACUUGAGCAUAUCU ..((((.....))))......((((..(((...((((((.(((.......))).((..(((((((((.....)))...))))))..))..........))))))...)))..)))).... ( -30.60) >consensus UCUCCAUUAACUGGAUCCCAAAUGCCAAAGACACAAGCCUCCACAACAUUUGGCAUUUCAGCGAUGACACUUUCAAUCUCGCUGGGGUAAUACAUGAUGGUCUGAUACUUGAGCAUAUCC ((.((((((.....(((((((((((((((...................)))))))))).((((((((.....)))...))))))))))......))))))...))............... (-27.62 = -27.56 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:34 2006