Locus 2148

Sequence ID 3L_DroMel_CAF1
Location 5,846,481 – 5,846,601
Length 120
Max. P 0.752002
window3343

overview

Window 3

Location 5,846,481 – 5,846,601
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.17
Mean single sequence MFE -35.00
Consensus MFE -34.31
Energy contribution -34.00
Covariance contribution -0.31
Combinations/Pair 1.09
Mean z-score -1.47
Structure conservation index 0.98
SVM decision value 0.48
SVM RNA-class probability 0.752002
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5846481 120 + 23771897
GAAGUAUCGAAUAUCGAUGGUGUUCGUAAGUUCCUCGCAAUUGGCGAUGCUGUCCAAUUGCCCGGAAUUCUAUGCGGCGGACCUAUCAUCCGUGAAGUAUUUCUUUUACGGCGGAUCAAA
......(((......(((((.((((((.((((((..((((((((((....)).))))))))..)))))).......)))))))))))..((((((((......)))))))))))...... ( -37.50)
>DroSec_CAF1 53768 120 + 1
GAAGUACAAAAUAUCGAUGGUGUUCGUAAGUUCCUCGCAAUUGGCGAUGCUGUCCAAUUGCCCGGAAUUCUAUGUGGCGGACCUAUCAUCCGUGAAGUAUUUCUUUUACGGCGGAUCAAA
...............(((((.((((((.((((((..((((((((((....)).))))))))..)))))).......)))))))))))((((((...(((.......))).)))))).... ( -37.20)
>DroSim_CAF1 37215 120 + 1
GAAGUACAAAAUAUCGAUGGUGUUCGUAAGUUCCUCGCAAUUGGCGAUGCUGUCCAAUUGCCCGGAAUUCUAUGCGGCGGACCUAUCAUCCGUGAAGUAUUUCUUUUACGGCGGAUCAAA
...............(((((.((((((.((((((..((((((((((....)).))))))))..)))))).......)))))))))))((((((...(((.......))).)))))).... ( -37.20)
>DroYak_CAF1 59135 120 + 1
GAAGUACAAAAUAUCGAUGGUGUUCGUAAGUUCCUCGCAAUUGGCCAUGCUGUCCAACUGCUCGGAAUUCUAUUCAGCGGAUUUAUCAUCUGUAAAGUAUUUCUUCUACGGCGGAUCAAA
(((((((....(((.((((((((((((.((((((..(((.((((.(.....).)))).)))..)))))).......))))))..)))))).)))..)))))))................. ( -28.10)
>consensus
GAAGUACAAAAUAUCGAUGGUGUUCGUAAGUUCCUCGCAAUUGGCGAUGCUGUCCAAUUGCCCGGAAUUCUAUGCGGCGGACCUAUCAUCCGUGAAGUAUUUCUUUUACGGCGGAUCAAA
...............(((((.((((((.((((((..(((((((((......).))))))))..)))))).......)))))))))))((((((...(((.......))).)))))).... (-34.31 = -34.00 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:33 2006