Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,845,601 – 5,845,718 |
Length | 117 |
Max. P | 0.662557 |
Location | 5,845,601 – 5,845,718 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.00 |
Mean single sequence MFE | -35.08 |
Consensus MFE | -25.84 |
Energy contribution | -26.52 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.08 |
Mean z-score | -1.80 |
Structure conservation index | 0.74 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662557 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5845601 117 + 23771897 AACUUAAAGAUCUGGAGUGGUGGCGAAAAACGCAGUUUAUUCUCACCAGAUUUGUCCAUUGGAGAAAUUAUCUUUCAACAAAUGGAGCGCAAUGCUAUGCUCACUGCCCAGGUACUU--- ......(((((((((.(..((((((.....(((.......(((....)))....(((((((..((((.....))))..).)))))))))........))).)))..))))))).)))--- ( -29.52) >DroSec_CAF1 53271 117 + 1 AGCUUAAAGAUCUGGAGUGGUGGCGAAAAGCGCAGUUUAUUCUCCCCAGAUUUGUCCAUCGGAGAGAUUAUCUUUCAACAAAUGGAGCGCAAUCCUAUGCUCACUGCCCAGGUAUUU--- .........((((((.(..((((((....((((.......(((....)))....(((((..(((((.....))))).....))))))))).......))).)))..)))))))....--- ( -33.50) >DroSim_CAF1 36335 117 + 1 AACUUAAAAAUCUGGAGUGGUGGCGAAAAGCGCAGUUUAUUCUCCCCAGAUUUGUCCAUCGGAGAGAUUAUCUUUCAACAAAUGGAGCGCAAUCCUAUGCUCACUGCCCAGGUAUUU--- .........((((((.(..((((((....((((.......(((....)))....(((((..(((((.....))))).....))))))))).......))).)))..)))))))....--- ( -33.40) >DroEre_CAF1 54526 117 + 1 AACCUAAAGAUAUGGAGUAGUGGCGAGAUGCGGAGUUUAUUCUCCGCAGAUUUGUCCAUCGGAGAGAUUAUCUUUCCACAAAUGGAGCGCAAUCCCGAGCUCACCGCCCAGGUAUUU--- .((((........((.(..(((((..(.(((((((......)))))))(((((((((((.((((((.....))))))....))))).)).)))).)..)).)))..)))))))....--- ( -38.50) >DroYak_CAF1 58246 120 + 1 AAGUUGAAGAUCUGGAGUGGUGGCGAGAAGCGGAGUUUGUUCUCCCCAGAUUUGUCCAUCGGAGAGAUUACCUUUCAGCAAAUGGAGCGUAAUCCCAAGCUCACCGCACAGGUAUUUCAA ...(((((((((((..(((((.((.....)).(((((((.(((((...(((......))))))))((((((.(((((.....))))).)))))).)))))))))))).))))).)))))) ( -40.50) >consensus AACUUAAAGAUCUGGAGUGGUGGCGAAAAGCGCAGUUUAUUCUCCCCAGAUUUGUCCAUCGGAGAGAUUAUCUUUCAACAAAUGGAGCGCAAUCCUAUGCUCACUGCCCAGGUAUUU___ .........((((((.(((((((((((((((...)))).)))......(((((((((((..(((((.....))))).....))))).)).))))....)).))))))))))))....... (-25.84 = -26.52 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:31 2006