Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,840,300 – 5,840,404 |
Length | 104 |
Max. P | 0.983054 |
Location | 5,840,300 – 5,840,404 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 90.82 |
Mean single sequence MFE | -25.51 |
Consensus MFE | -20.59 |
Energy contribution | -21.07 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.08 |
Mean z-score | -2.33 |
Structure conservation index | 0.81 |
SVM decision value | 1.93 |
SVM RNA-class probability | 0.983054 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5840300 104 + 23771897 CAUCUUCAUCUUCAAC------UUCAACUUCAACUUGAUCCCCCUGCCAAUGUUGUUGUUGUUGCUGAUGAUUGUUUAUUAAGCAGCGCCAGCAAAAGCUGCAAGUUGCG .....(((((..((((------..((((..((..(((..........)))))..))))..))))..)))))...........(((((..((((....))))...))))). ( -26.30) >DroSec_CAF1 47923 101 + 1 CAUCUUCAUCUUCAAC------UUCAACUUCAACUUGAUCCCACUGCCAAUAUUGU---UGUUGCUGAUGAUUGUUUAUUAAGCAGCGCCAGCAAAAGCUGCAAGCUGCG .....(((((..((((------..(((........((....)).........))).---.))))..)))))...........(((((..((((....))))...))))). ( -23.83) >DroSim_CAF1 30989 101 + 1 CAUCUUCAUCUUCAAC------UUCAACUUCAACUUGAUCCCACUGCCAAUGUUGU---UGUUGCUGAUGAUUGUUUAUUAAGCAGCGCCAGCAAAAGCUGCAAGCUGCG .....(((((..((((------..((((.......................)))).---.))))..)))))...........(((((..((((....))))...))))). ( -27.60) >DroEre_CAF1 49180 95 + 1 CAUCUUCAUCUUCA------------ACUUCAACUUGAUCCCAUUGCCAAUGUUGU---UGUUGCUGAUGAUUGUUUAUUAAGCAGCGCCAGCAAAAGCUGCAAGCUGCG .....(((((..((------------((..(((((((..........))).)))).---.))))..)))))...........(((((..((((....))))...))))). ( -29.30) >DroYak_CAF1 52780 105 + 1 CAUCUUCAUCUUCAACUUUAACUUCAACUUCAACUUGAUCCCACUGCCAAUGUUGU---UGUUGCUGAUGAUUGUUUAUUAAGCAGCGCCAGCA--AGUUGCGAUCUGCG ....................................(((((.(((.....(((((.---((((((((((((....))))).))))))).)))))--))).).)))).... ( -20.50) >consensus CAUCUUCAUCUUCAAC______UUCAACUUCAACUUGAUCCCACUGCCAAUGUUGU___UGUUGCUGAUGAUUGUUUAUUAAGCAGCGCCAGCAAAAGCUGCAAGCUGCG .....(((((..((((..............(((((((..........))).)))).....))))..)))))...........(((((..((((....))))...))))). (-20.59 = -21.07 + 0.48)
Location | 5,840,300 – 5,840,404 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 90.82 |
Mean single sequence MFE | -27.68 |
Consensus MFE | -21.56 |
Energy contribution | -22.80 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.87 |
Structure conservation index | 0.78 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842927 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5840300 104 - 23771897 CGCAACUUGCAGCUUUUGCUGGCGCUGCUUAAUAAACAAUCAUCAGCAACAACAACAACAUUGGCAGGGGGAUCAAGUUGAAGUUGAA------GUUGAAGAUGAAGAUG .(((...((((((....))).))).)))..........(((.(((((..((((..((((.((((........))))))))..))))..------))))).)))....... ( -25.10) >DroSec_CAF1 47923 101 - 1 CGCAGCUUGCAGCUUUUGCUGGCGCUGCUUAAUAAACAAUCAUCAGCAACA---ACAAUAUUGGCAGUGGGAUCAAGUUGAAGUUGAA------GUUGAAGAUGAAGAUG .(((((...((((....))))..)))))...........(((((..((((.---.((((.(..((..((....)).))..).))))..------))))..)))))..... ( -30.50) >DroSim_CAF1 30989 101 - 1 CGCAGCUUGCAGCUUUUGCUGGCGCUGCUUAAUAAACAAUCAUCAGCAACA---ACAACAUUGGCAGUGGGAUCAAGUUGAAGUUGAA------GUUGAAGAUGAAGAUG .(((((...((((....))))..)))))...........(((((..((((.---.((((.(..((..((....)).))..).))))..------))))..)))))..... ( -31.90) >DroEre_CAF1 49180 95 - 1 CGCAGCUUGCAGCUUUUGCUGGCGCUGCUUAAUAAACAAUCAUCAGCAACA---ACAACAUUGGCAAUGGGAUCAAGUUGAAGU------------UGAAGAUGAAGAUG .(((((...((((....))))..)))))...........(((((..((((.---.((((.((((........))))))))..))------------))..)))))..... ( -29.60) >DroYak_CAF1 52780 105 - 1 CGCAGAUCGCAACU--UGCUGGCGCUGCUUAAUAAACAAUCAUCAGCAACA---ACAACAUUGGCAGUGGGAUCAAGUUGAAGUUGAAGUUAAAGUUGAAGAUGAAGAUG .((((..(((....--.....)))))))..........(((.((((((((.---.((((.(..((..((....)).))..).))))..)))...))))).)))....... ( -21.30) >consensus CGCAGCUUGCAGCUUUUGCUGGCGCUGCUUAAUAAACAAUCAUCAGCAACA___ACAACAUUGGCAGUGGGAUCAAGUUGAAGUUGAA______GUUGAAGAUGAAGAUG .(((((...((((....))))..)))))...........(((((..((((.....((((.(..((...........))..).))))........))))..)))))..... (-21.56 = -22.80 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:30 2006