Locus 2143

Sequence ID 3L_DroMel_CAF1
Location 5,834,071 – 5,834,172
Length 101
Max. P 0.761365
window3335

overview

Window 5

Location 5,834,071 – 5,834,172
Length 101
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 92.61
Mean single sequence MFE -24.30
Consensus MFE -19.52
Energy contribution -21.56
Covariance contribution 2.04
Combinations/Pair 1.04
Mean z-score -1.61
Structure conservation index 0.80
SVM decision value 0.50
SVM RNA-class probability 0.761365
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5834071 101 + 23771897
ACCAACUUCUCACCUCGCAUUCCUGAGCAGUGACGCUCCUCAGCCGACGACAAAUUGUCUAAUAGAAAUGUCAGAACGAAAUCUGUCCCAGAAACGUCGUC---------
......................(((((.((.....)).)))))..((((((...((((((.(((....))).)).))))..((((...))))...))))))--------- ( -22.20)
>DroSec_CAF1 41677 101 + 1
ACCAACUUCUCACCUCGCAUUCCUGAGCAGUGACGCUCCUCUGCCGACGACAAAUUGUCUAAUAGAAAUGUCAGAACGAAAUCUGUCCCAGAAACGUCGUC---------
................(((.....((((......))))...))).((((((...((((((.(((....))).)).))))..((((...))))...))))))--------- ( -21.80)
>DroSim_CAF1 24680 101 + 1
ACCAACUUCUCACCUCGCAUUCCUGAGCAGUGACGCUCCUCAGCCGACGACAAAUUGUCUAAUAGAAAUGUCAGAACGAAAUCUGUCCCAGAAACGUCGUC---------
......................(((((.((.....)).)))))..((((((...((((((.(((....))).)).))))..((((...))))...))))))--------- ( -22.20)
>DroEre_CAF1 42759 104 + 1
CCCAACUUCUCACCUCGAAUUCCUGAGCAGUGAUGCUCCUCAGCCGACGACAAAUUGUCUAAUAGAAAUGUCAGAACGAAAUCUGUCCCAGAAACGUCGUCGUC------
........................(((((....)))))......(((((((...((((((.(((....))).)).))))..((((...))))...)))))))..------ ( -26.00)
>DroYak_CAF1 45577 110 + 1
GCCAACUUCUCACCUCGAAUUCCUGAGCAGUGAUGCUGUUCAGUCGACGACAAAUUGUCUAAUAGAAAUGUCAGAACGAAAUCUGUCCCAGAAACGUCGUCUUCAUCGUC
...............(((....((((((((.....))))))))..((((((...((((((.(((....))).)).))))..((((...))))...))))))....))).. ( -29.30)
>consensus
ACCAACUUCUCACCUCGCAUUCCUGAGCAGUGACGCUCCUCAGCCGACGACAAAUUGUCUAAUAGAAAUGUCAGAACGAAAUCUGUCCCAGAAACGUCGUC_________
......................(((((.((.....)).)))))..((((((...((((((.(((....))).)).))))..((((...))))...))))))......... (-19.52 = -21.56 +   2.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:25 2006