Locus 2142

Sequence ID 3L_DroMel_CAF1
Location 5,832,376 – 5,832,476
Length 100
Max. P 0.763771
window3334

overview

Window 4

Location 5,832,376 – 5,832,476
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 89.08
Mean single sequence MFE -22.57
Consensus MFE -16.82
Energy contribution -16.93
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.67
Structure conservation index 0.75
SVM decision value 0.51
SVM RNA-class probability 0.763771
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5832376 100 + 23771897
GUGUGUAUAAUACACACUGUACAUCCCAUACAUACAAAAAGAUACAAAGAUACAUAUAUAUAUUGUAUGUAUGUCAGUCUGUGCUGUGUGCCCACCCUGA
(((((((...))))))).........(((((((((((.........................)))))))))))((((..((.((.....)).))..)))) ( -24.31)
>DroSec_CAF1 39992 93 + 1
GUGUGUAUAAUGCACACUGGACAUCCCAUCCAUACAAAAAGAUACUU--AUACAUACAUAA-----AUGUAUCUGAGUCUGUGCUGUGUGCCCACCCUGA
(((.(((((..((((..((((.......)))).......((((.(..--((((((......-----))))))..).))))))))..))))).)))..... ( -23.00)
>DroSim_CAF1 22987 93 + 1
GUGUGUAUAAUACACACUGUACAUCCCAUCCAUACAAAAAGAUACUU--AUACAUACAUAA-----AUGUAUCUGAGUCUGUGCUGUGUGCCCACCCUGA
(((((((...))))))).............((((((...((((.(..--((((((......-----))))))..).))))....)))))).......... ( -20.40)
>consensus
GUGUGUAUAAUACACACUGUACAUCCCAUCCAUACAAAAAGAUACUU__AUACAUACAUAA_____AUGUAUCUGAGUCUGUGCUGUGUGCCCACCCUGA
(((((((...))))))).............((((((...((((.(....((((((...........))))))..).))))....)))))).......... (-16.82 = -16.93 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:24 2006