| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,831,391 – 5,831,481 |
| Length | 90 |
| Max. P | 0.629215 |
| Location | 5,831,391 – 5,831,481 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 71.03 |
| Mean single sequence MFE | -28.58 |
| Consensus MFE | -11.97 |
| Energy contribution | -11.97 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.629215 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5831391 90 + 23771897 CACACAC--AGUUUG-------ACGAUGUCCAUCAGCUAGAUAAAGUUGUCAGCUGAUCUGGGGAUUGCAGCCAAGC-----GACAGUAGCA---------UAUGAAAUGCAU---- .......--.(((((-------.((((.((((((((((.((((....))))))))))..)))).))))....)))))-----.......(((---------(.....))))..---- ( -25.30) >DroPse_CAF1 43333 92 + 1 CACACAGCCACUGGGGUCCAUCCAGCAGUCCAUCAGCUAGAUAAAGUUGUCAGCUGAUCGGGGACUUGAA----------------GCGGCA---------GAUGAAAUGUCUAUGU ...((((((.(((((.....))))).((((((((((((.((((....)))))))))))...)))))....----------------..)))(---------(((.....)))).))) ( -30.00) >DroSim_CAF1 22006 90 + 1 CACACAC--AGUUUG-------ACGAUGUCCAUCAGCUAGAUAAAGUUGUCAGCUGAUCUGGGAAUUGCAGCCAAGC-----GGCAGUAGCA---------UAUGAAAUGCAU---- .......--....((-------.((((..(((((((((.((((....))))))))))..)))..))))))(((....-----)))....(((---------(.....))))..---- ( -25.30) >DroEre_CAF1 39931 103 + 1 CACACAC--AGUUUG-------CUGAUGUCCAUCAGCUAGAUAAAGUUGUCAGCUGAUCUGG-GAUUGCAGCAACGCAGGGCAGCAGCGGCAACAUGGCCACGCGAAAUGCAU---- .......--.(((.(-------(((..(((((((((((.((((....)))))))))))...)-)))..)))))))(((.....((.(.(((......))).)))....)))..---- ( -34.80) >DroYak_CAF1 42775 90 + 1 CACACAC--AGUUUG-------CUGAUGUCCAUCAGCUAGAUAAAGUUGUCAGCUGAUCGGG-GAUUGCAACAACGC----CAGCAGCGGCA---------UAUGAAAUGCAU---- .......--.(((.(-------(.(((.((((((((((.((((....))))))))))).)))-.))))))))..(((----.....)))(((---------(.....))))..---- ( -27.40) >DroPer_CAF1 43330 92 + 1 CACACAGCCACUGUGGUCCAUCCAGCAGUCCAUCAGCUAGAUAAAGUUGUCAGCUGAUCGGGGACUUGAA----------------GCGGCA---------GAUGAAAUGUCUAUGU ...((((((.((..(((((...(....).(((((((((.((((....))))))))))).)))))))...)----------------).)))(---------(((.....)))).))) ( -28.70) >consensus CACACAC__AGUUUG_______CAGAUGUCCAUCAGCUAGAUAAAGUUGUCAGCUGAUCGGGGAAUUGCAGC_A_GC______GCAGCGGCA_________UAUGAAAUGCAU____ .............................(((((((((.((((....)))))))))))..))....................................................... (-11.97 = -11.97 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:20 2006