Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,829,480 – 5,829,573 |
Length | 93 |
Max. P | 0.880155 |
Location | 5,829,480 – 5,829,573 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 86.99 |
Mean single sequence MFE | -27.33 |
Consensus MFE | -26.89 |
Energy contribution | -27.00 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -0.85 |
Structure conservation index | 0.98 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.737560 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5829480 93 + 23771897 UGCGGUUUCGGGGCGACAGUUGUGCCCUCCCCCCUCAAAA-----AAAAGAAAAAGAAAAAAGACCGGCGAUUUCAACGUGGGUUGCGGCUGAGUGCC .((((....(((((.((....)))))))....))......-----.................((((.(((.......))).))))))(((.....))) ( -24.60) >DroSec_CAF1 37217 88 + 1 UGCGGUUUUGGGGCGACAGUUGUGCCCUCCCCCCUCAAACAAA----------AAAGAAAAAGACCCACGAUUUCAACGUGGGUUGCGGCUGAGUGCC .((((....(((((.((....)))))))....)).........----------.........((((((((.......))))))))))(((.....))) ( -28.70) >DroSim_CAF1 20143 98 + 1 UGCGGUUUUGGGGCGACAGUUGUGCCCUCCCCCCUCAAACAAAAAAAAAGAAAAAAGAAAAAGACCCACGAUUUCAACGUGGGUUGCGGCUGAGUGCC .((((....(((((.((....)))))))....))............................((((((((.......))))))))))(((.....))) ( -28.70) >consensus UGCGGUUUUGGGGCGACAGUUGUGCCCUCCCCCCUCAAACAAA__AAAAGAAAAAAGAAAAAGACCCACGAUUUCAACGUGGGUUGCGGCUGAGUGCC .((((....(((((.((....)))))))....))............................((((((((.......))))))))))(((.....))) (-26.89 = -27.00 + 0.11)
Location | 5,829,480 – 5,829,573 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 86.99 |
Mean single sequence MFE | -30.37 |
Consensus MFE | -28.80 |
Energy contribution | -29.47 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.55 |
Structure conservation index | 0.95 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.880155 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5829480 93 - 23771897 GGCACUCAGCCGCAACCCACGUUGAAAUCGCCGGUCUUUUUUCUUUUUCUUUU-----UUUUGAGGGGGGAGGGCACAACUGUCGCCCCGAAACCGCA (((.....))).((((....)))).....((.(((.....(((((((((....-----....)))))))))((((((....)).))))....))))). ( -24.90) >DroSec_CAF1 37217 88 - 1 GGCACUCAGCCGCAACCCACGUUGAAAUCGUGGGUCUUUUUCUUU----------UUUGUUUGAGGGGGGAGGGCACAACUGUCGCCCCAAAACCGCA (((.....)))((.(((((((.......)))))))..........----------...((((..((((.((.((.....)).)).)))).)))).)). ( -33.10) >DroSim_CAF1 20143 98 - 1 GGCACUCAGCCGCAACCCACGUUGAAAUCGUGGGUCUUUUUCUUUUUUCUUUUUUUUUGUUUGAGGGGGGAGGGCACAACUGUCGCCCCAAAACCGCA (((.....)))((.(((((((.......))))))).......................((((..((((.((.((.....)).)).)))).)))).)). ( -33.10) >consensus GGCACUCAGCCGCAACCCACGUUGAAAUCGUGGGUCUUUUUCUUUUUUCUUUU__UUUGUUUGAGGGGGGAGGGCACAACUGUCGCCCCAAAACCGCA (((.....)))((.(((((((.......))))))).............................((((.((.((.....)).)).))))......)). (-28.80 = -29.47 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:19 2006