Locus 2138

Sequence ID 3L_DroMel_CAF1
Location 5,828,552 – 5,828,647
Length 95
Max. P 0.549699
window3327

overview

Window 7

Location 5,828,552 – 5,828,647
Length 95
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 87.84
Mean single sequence MFE -20.64
Consensus MFE -17.69
Energy contribution -17.80
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -1.63
Structure conservation index 0.86
SVM decision value 0.03
SVM RNA-class probability 0.549699
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5828552 95 + 23771897
AGCCAGAAAUUGCAAAGUAGCCGAAGCACAGCCGCAUUCCCACAGCUACUGGUCCUGCUCCUGGCUUUUGGCCACAAA-----AAAAAAAUAAGCAAAGC
.((.(....).))...((.((((((((.(((..(((...(((.......)))...)))..))))).)))))).))...-----................. ( -21.70)
>DroSim_CAF1 19201 96 + 1
AGCCAGAAAUUGCAAAGUAGCCGAAGCACAGCCGCAUUCCCACAGCUACUGGUCCUGCUCCUGCCUUUUGGCCACAAAA----AAAAAAAUAAGCAAAGC
.((.(....).))...((.(((((((..(((..(((...(((.......)))...)))..)))..))))))).))....----................. ( -19.50)
>DroEre_CAF1 36988 96 + 1
AGCCAGAAAUUGCAAAGUAGCCAGAGCACAGCCGCAUUCCCACAGCUACUGGUCCUGCUCCUGCCUUUCGGCCACAAAAUAAU---AAAAAAAAAAACU-
.(((.((((..(((.((((((((((((.................))).))))..)))))..))).)))))))...........---.............- ( -20.73)
>consensus
AGCCAGAAAUUGCAAAGUAGCCGAAGCACAGCCGCAUUCCCACAGCUACUGGUCCUGCUCCUGCCUUUUGGCCACAAAA____AAAAAAAUAAGCAAAGC
.((........))...((.(((((((..(((..(((...(((.......)))...)))..)))..))))))).))......................... (-17.69 = -17.80 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:17 2006