Locus 2137

Sequence ID 3L_DroMel_CAF1
Location 5,827,941 – 5,828,033
Length 92
Max. P 0.810370
window3326

overview

Window 6

Location 5,827,941 – 5,828,033
Length 92
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.28
Mean single sequence MFE -29.93
Consensus MFE -20.80
Energy contribution -20.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.37
Structure conservation index 0.69
SVM decision value 0.65
SVM RNA-class probability 0.810370
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5827941 92 - 23771897
ACUGAGAU--------GCUC----C----CAAGGCUCCCCAGUUAUGUCGCGCCAUGUUUGGCGUAUGAUUUCAAAAAUUGCCCUUUUUGGGGUUUCGACUUACAGGC------------
((((.(..--------(((.----.----...)))..).))))...(((((((((....))))))..(((..((((((......))))))..)))..)))........------------ ( -25.00)
>DroVir_CAF1 41792 93 - 1
C--GCCCA--------GCUCCC----------AGCUCUGCAGUUAUGUCGCGCCAUGUUUGGCGUAUGAUUUCAAAAAUUGCCCUUUUUGGGGUUUCGACUUACAGCAGAGCG-------
.--.....--------......----------.(((((((.((...(((((((((....))))))..(((..((((((......))))))..)))..)))..)).))))))).------- ( -35.20)
>DroGri_CAF1 45715 102 - 1
ACUUCCCA--------GCU----ACCC-----AUCUCUGCAGUUAUGUCGCGCCAUGUUUGGCGUAUGAUUUCAAAAAUUGCCCUUUUUGGGGUUUCGACUUACAGCG-AGCAGAUCCUG
........--------...----....-----...(((((.(((..(((((((((....))))))..(((..((((((......))))))..)))..)))....))).-.)))))..... ( -27.60)
>DroYak_CAF1 38962 97 - 1
ACUGAGAU--------GCUC----C----CAAGGCUCCCCAGUUAUGUCGCGCCAUGUUUGGCGUAUGAUUUCAAAAAUUGCCCUUUUUGGGGUUUCGACUUACAGCCAACAG-------
........--------....----.----...((((.....((...(((((((((....))))))..(((..((((((......))))))..)))..)))..)))))).....------- ( -25.10)
>DroMoj_CAF1 43153 105 - 1
CCUACCCA--------GCGGCCUACCCAGCAGAGCUCGGCAGUUAUGUCGCGCCAUGUUUGGCGUAUGAUUUCAAAAAUUGCCCUUUUUGGGGUUUCGACUUACAGAGGAGGG-------
(((.((((--------((((....(((((.((((...(((((((.....((((((....)))))).((....))..))))))))))))))))...))).))....).))))).------- ( -31.40)
>DroAna_CAF1 38384 98 - 1
ACCGGGAUGUGGGACUGCUC----C----CAAGGCUC-CCAGUUAUGUCGCGCCAUGUUUGGCGUAUGAUUUCAAAAAUUGCCCUUUUUGGGGUUUCGACUUACAGG-------------
.((((((..(((((....))----)----))....))-)).((...(((((((((....))))))..(((..((((((......))))))..)))..)))..)).))------------- ( -35.30)
>consensus
ACUGCCAA________GCUC____C____CAAAGCUCCCCAGUUAUGUCGCGCCAUGUUUGGCGUAUGAUUUCAAAAAUUGCCCUUUUUGGGGUUUCGACUUACAGCC_AG_G_______
.........................................((...(((((((((....))))))..(((..((((((......))))))..)))..)))..))................ (-20.80 = -20.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:16 2006