Locus 2136

Sequence ID 3L_DroMel_CAF1
Location 5,827,735 – 5,827,831
Length 96
Max. P 0.680556
window3325

overview

Window 5

Location 5,827,735 – 5,827,831
Length 96
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 82.72
Mean single sequence MFE -34.55
Consensus MFE -21.41
Energy contribution -21.99
Covariance contribution 0.59
Combinations/Pair 1.08
Mean z-score -2.42
Structure conservation index 0.62
SVM decision value 0.30
SVM RNA-class probability 0.680556
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5827735 96 + 23771897
CUGUUUGCGGAUUGUGCAAUUGAUGUGCGAACUUCGACACCAUCU----------------CUGCCUUCUUUUCGCCUCGUUUUCCCGCGUGGUCUGGCGCAGAGAUGGUGG
..(((((((.((((......)))).))))))).....((((((((----------------((((((.......(((.(((......))).)))..)).)))))))))))). ( -38.80)
>DroSec_CAF1 35459 95 + 1
CUGUUUGCGGAUUGUGCAAUUGAUGUGCGAACUUCGACACCAUCU----------------CUGCCUUCUUUUCGCCUCGUUUUCCCGCA-GGCCUGGCGCAGAGAUGGUGG
..(((((((.((((......)))).))))))).....((((((((----------------((((((.......((((((......)).)-)))..)).)))))))))))). ( -39.20)
>DroSim_CAF1 17711 95 + 1
CUGUUUGCGGAUUGUGCAAUUGAUGUGCGAACUUCGACACCAUCU----------------CUGCCUUCUUUUCGCCUCGUUUUCCCGCA-GGCCUGGCGCAGAGAUGGUGG
..(((((((.((((......)))).))))))).....((((((((----------------((((((.......((((((......)).)-)))..)).)))))))))))). ( -39.20)
>DroEre_CAF1 36109 95 + 1
CUGUUUGCGGAUUGUGCAAUUGAUGUGCGAACUUCGACACCAUCU----------------CUGCCUUCUUUUCGCCUCGUUUUCCCGCA-GGGCUGGCGCAGAGAUGGUGG
..(((((((.((((......)))).))))))).....((((((((----------------((((((.......(((..((......)).-.))).)).)))))))))))). ( -38.40)
>DroYak_CAF1 38725 111 + 1
CUGUUUGCGGAUUGUGCAAUUGAUGUGCGAACUUCGACACCAUCUCUCUCUCUCUCACUCUCUGCCUUCUUUUCGCCUCGUUUUCCCGCC-GGCCUGGCGCAGAGAUGUUGG
..(((((((.((((......)))).)))))))..(((((...................(((((((((.......(((.((......))..-)))..)).)))))))))))). ( -25.50)
>DroPer_CAF1 39429 80 + 1
CUGUUUGCGGAUUGUGCAAUUGAUGUGCGAACUUCGACACCAAGU----------------CGGGGAUCUGUGGGCU----------------CUUGGCUGAGAAACAGUGG
..(((..(((((((..((.....))..))).(((((((.....))----------------))))).))))..))).----------------....((((.....)))).. ( -26.20)
>consensus
CUGUUUGCGGAUUGUGCAAUUGAUGUGCGAACUUCGACACCAUCU________________CUGCCUUCUUUUCGCCUCGUUUUCCCGCA_GGCCUGGCGCAGAGAUGGUGG
..(((((((.((((......)))).))))))).............................(((((.(((((.((((...................)))).))))).))))) (-21.41 = -21.99 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:15 2006