| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,826,250 – 5,826,349 |
| Length | 99 |
| Max. P | 0.963764 |
| Location | 5,826,250 – 5,826,349 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.21 |
| Mean single sequence MFE | -22.67 |
| Consensus MFE | -21.90 |
| Energy contribution | -21.90 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.97 |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.963764 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5826250 99 + 23771897 AUCAAAUUAAAAACUGGCGUCUACCUUUUUAUCAUUUUCUUAUCAGAUCUCAAGAUCUGCCGCAGCGAUGCCUUCUGCUGUGCGCCUUUUAUGCG---------------AAUA------ ...............((((........................((((((....)))))).((((((((.....)).)))))))))).........---------------....------ ( -21.90) >DroVir_CAF1 39904 105 + 1 AUCAAAUUAAAAACUGGCGUCUACCUUUUUAUCAUUUUCUUAUCAGAUCUCAAGAUCUGCCGCAGCGAUGCCUUCUGCUGUGCGCCUUUUAUACG---------------UGUGUGUCGA ..............(((((..(((....................(((((....)))))((((((((((.....)).)))))).)).........)---------------))..))))). ( -22.20) >DroGri_CAF1 44056 116 + 1 AUCAAAUUAAAAACUGGCGUCUACCUUUUUAUCAUUUUCUUAUCAGAUCUCAAGAUCUGCCGCAGCGAUGCCUUCUGCUGUGCGCCUUUUAUGCGGAGUAAACAUGUGUGAGUGUG---- ...............((((........................((((((....)))))).((((((((.....)).)))))))))).((((((((.........))))))))....---- ( -24.60) >DroMoj_CAF1 41213 101 + 1 AUCAAAUUAAAAACUGGCGUCUACCUUUUUAUCAUUUUCUUAUCAGAUCUCAAGAUCUGCCGCAGCGAUGCCUUCUGCUGUGCGCCUUUUAUGCG---------------AGUGUG---- ............(((.((((........................(((((....)))))((((((((((.....)).)))))).)).....)))).---------------)))...---- ( -23.50) >DroAna_CAF1 36757 99 + 1 AUCAAAUUAAAAACUGGCGUCUACCUUUUUAUCAUUUUCUUAUCAGAUCUCAAGAUCUGCCGCAGCGAUGCCUUCUGCUGUGCGCCUUUUAUGCG---------------AAUA------ ...............((((........................((((((....)))))).((((((((.....)).)))))))))).........---------------....------ ( -21.90) >DroPer_CAF1 37755 99 + 1 AUCAAAUUAAAAACUGGCGUCUACCUUUUUAUCAUUUUCUUAUCAGAUCUCAAGAUCUGCCGCAGCGAUGCCUUCUGCUGUGCGCCUUUUAUGCG---------------AAUA------ ...............((((........................((((((....)))))).((((((((.....)).)))))))))).........---------------....------ ( -21.90) >consensus AUCAAAUUAAAAACUGGCGUCUACCUUUUUAUCAUUUUCUUAUCAGAUCUCAAGAUCUGCCGCAGCGAUGCCUUCUGCUGUGCGCCUUUUAUGCG_______________AAUA______ ...............((((........................((((((....)))))).((((((((.....)).)))))))))).................................. (-21.90 = -21.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:13 2006