Locus 2132

Sequence ID 3L_DroMel_CAF1
Location 5,823,635 – 5,823,727
Length 92
Max. P 0.524944
window3320

overview

Window 0

Location 5,823,635 – 5,823,727
Length 92
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 87.04
Mean single sequence MFE -25.12
Consensus MFE -17.26
Energy contribution -17.22
Covariance contribution -0.04
Combinations/Pair 1.15
Mean z-score -1.75
Structure conservation index 0.69
SVM decision value -0.02
SVM RNA-class probability 0.524944
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5823635 92 + 23771897
-----AAAUCUUGGAAGCGAUC--AACAAUGGGUAUUCAAAUGGGAAAAGCCCAGGUGGUGACUCAUAU-GCUUAAUAAAGGGCAGUGCUUUGAUCACCG
-----.............((((--((..((((((..(((..((((.....))))..)))..)))))).(-((((......))))).....)))))).... ( -25.10)
>DroSec_CAF1 31417 89 + 1
-----AAAUCUUGGAACCGAUC--AACAAUGGGUAUUCAAAUGGGAAAAGCCCAGG---UGACUCACAU-GCUUAAUAAAGGGCAGUGCUUUGAUCACCG
-----.....((((((((.((.--....)).))).))))).((((.....))))((---((((.(((.(-((((......))))))))....).))))). ( -24.00)
>DroSim_CAF1 14225 89 + 1
-----AAAUCUUGGAACCGAUC--AACAAUGGGUUUUCAAAUGGGAAAAGCCCAGG---UGACUCACAU-GCUUAAUAAAGGGCAGUGCUUUGAUCGCCG
-----.......((...(((((--((((.(((((((((......).))))))))..---))...(((.(-((((......))))))))..))))))))). ( -25.00)
>DroEre_CAF1 31963 89 + 1
-----AAAUCAUGCAACUGAUC--CACAAUGGGUAUUCAAAUGGGAAAAGCCCAGG---UGACUCACAU-GCCUAAUAAAGGGCAGAGCUUUGAUCGACG
-----..((((.((..(((.((--(....((((((((((..((((.....))))..---))).....))-))))).....)))))).))..))))..... ( -23.10)
>DroYak_CAF1 34234 97 + 1
CCCCAAAAUCUGGGAACUGAUCACAACAAUGGGCAUACGAAUGGGAAAAGCCCAGG---UGACUCACCUGGCCUAAUAAAGGGGAGGGCUUUGAUCACCG
.((((.....))))...(((((....((.(.(.....).).))...((((((((((---((...)))))..(((......)))..))))))))))))... ( -28.40)
>consensus
_____AAAUCUUGGAACCGAUC__AACAAUGGGUAUUCAAAUGGGAAAAGCCCAGG___UGACUCACAU_GCUUAAUAAAGGGCAGUGCUUUGAUCACCG
..................((((.......(((((.......((((.....)))).......)))))(((.((((......)))).)))....)))).... (-17.26 = -17.22 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:10 2006