Locus 2127

Sequence ID 3L_DroMel_CAF1
Location 5,816,905 – 5,816,995
Length 90
Max. P 0.634503
window3311

overview

Window 1

Location 5,816,905 – 5,816,995
Length 90
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 82.46
Mean single sequence MFE -20.48
Consensus MFE -15.19
Energy contribution -14.75
Covariance contribution -0.44
Combinations/Pair 1.23
Mean z-score -1.59
Structure conservation index 0.74
SVM decision value 0.21
SVM RNA-class probability 0.634503
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5816905 90 - 23771897
CAAAUAUAUAAUUUAUUAUACAAUGGCAUGCCCAGCGAGGCGGCGAGCAGCAAAAUGCGUCGCCACAUUCAACCAUCACAGCUGCCA---------CAU
.......................(((((.(((......)))((((((((......))).)))))..................)))))---------... ( -23.80)
>DroPse_CAF1 26990 99 - 1
CAAAUAUAUAAUUUAUUAAACAAUGGCAGGCCCAGCGAGGCGGCGAACAGUAAAAUGCGUCGCCAUAUACCAACCACUCAGUUGCAACAGCAACAACAG
.......................(((...(((......)))(((((...((.....)).))))).....)))........(((((....)))))..... ( -22.40)
>DroSim_CAF1 7093 89 - 1
CAAAUAUAUA-UUUAUUAUACAAUGGCAUGCCCAGCGAGGCGGCGAGCAGCAAAAUGCGUCGCCACAUUCAACCAUCACAGCUGCCA---------CAU
..........-............(((((.(((......)))((((((((......))).)))))..................)))))---------... ( -23.80)
>DroYak_CAF1 26945 90 - 1
CAAAUAUAUAAUUUAUUAUACAAUGGCAUGCCCAGCGAGGCGGCGAGCAGCAAAACGCGUCGUCACAUUCAAUCCACACAGCUGCCC---------CAU
........................((((.(((......)))(((((((........)).)))))..................)))).---------... ( -17.60)
>DroAna_CAF1 25798 90 - 1
CAACUAUAUAAAUUAUUAAAUAAUGGCAAGUCCAGCGAGGCGGCGAGCAGUAAAAUGCGACGUCACAUUGAACCCACACAUCUGCAA---------CAU
....................(((((((..(.....)...))((((.(((......)))..)))).))))).................---------... ( -12.90)
>DroPer_CAF1 27077 99 - 1
CAAAUAUAUAAUUUAUUAAACAAUGGCAGGCCCAGCGAGGCGGCGAACAGUAAAAUGCGUCGCCAUAUACCAACCACUCAGUUGCAACAGCAACAACAG
.......................(((...(((......)))(((((...((.....)).))))).....)))........(((((....)))))..... ( -22.40)
>consensus
CAAAUAUAUAAUUUAUUAAACAAUGGCAUGCCCAGCGAGGCGGCGAGCAGCAAAAUGCGUCGCCACAUUCAACCCACACAGCUGCAA_________CAU
.........................(((.(((......)))(((((...((.....)).)))))..................))).............. (-15.19 = -14.75 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:02 2006