| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,811,848 – 5,811,940 |
| Length | 92 |
| Max. P | 0.745018 |
| Location | 5,811,848 – 5,811,940 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 80.24 |
| Mean single sequence MFE | -26.04 |
| Consensus MFE | -14.76 |
| Energy contribution | -16.00 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.745018 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5811848 92 - 23771897 AAAAAAAAAACGGAAACUGGUCGAUCAAUGA-GCCCCUCUGUUGUUCCGAUCCAUCCA------------------CAUCCACUCGAGCACUCGAGCAGCGGAUGUGACAU ...........(....)((((((..((((((-(...))).))))...))).)))..((------------------(((((.(((((....)))))....))))))).... ( -25.50) >DroSec_CAF1 19717 86 - 1 A------AAUCGGAAACUUGGCGAUCAAUGA-GCCCCUCUGUUGUUCCGAUCCAUCCA------------------CAUCCACUCGAGCACUCGAGCAGCGGAUGUGACAU .------.(((((((((..(((.........-))).....))..))))))).....((------------------(((((.(((((....)))))....))))))).... ( -26.50) >DroSim_CAF1 2018 85 - 1 A------A-ACGGAAACUUGGCGAUCAAUGA-GCCCCUCUGUUGUUCCGAUCCAUCCA------------------CAUCCACUCGAGCACUCGAGCAGCGGAUGUGACAU .------.-.(((((((..(((.........-))).....))..))))).......((------------------(((((.(((((....)))))....))))))).... ( -24.70) >DroEre_CAF1 20006 87 - 1 -ACGAAUAAACGGAAGCCGGGCGAUCAAUGAAGCCCCUCUG---UUCCGAUCCAUCCA------------------CAUCCACUCGAGCACUCG--CAGCGGAUGUGACAU -.........(((((...((((..........)))).....---))))).......((------------------(((((.(((((....)))--.)).))))))).... ( -28.40) >DroYak_CAF1 20847 105 - 1 -UCGAACAAACGGAAACCGGGCGAUCAAUGAAGCUCCUCUG---UUCCGAUCCAUCCACAUUCACAUCCACAUCCACAUCCAGUCGAGCACUCG--CAGCGGAUGUGACAU -.........(((((...((((..........)))).....---)))))............((((((((.(.((.((.....)).))((....)--).).))))))))... ( -25.10) >consensus A___AA_AAACGGAAACUGGGCGAUCAAUGA_GCCCCUCUGUUGUUCCGAUCCAUCCA__________________CAUCCACUCGAGCACUCGAGCAGCGGAUGUGACAU ..........(((((...((((..........))))........)))))...........................(((((.(((((....)))))....)))))...... (-14.76 = -16.00 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:01 2006