Locus 2123

Sequence ID 3L_DroMel_CAF1
Location 5,809,393 – 5,809,492
Length 99
Max. P 0.606221
window3303

overview

Window 3

Location 5,809,393 – 5,809,492
Length 99
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.11
Mean single sequence MFE -26.57
Consensus MFE -18.95
Energy contribution -18.95
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.24
Structure conservation index 0.71
SVM decision value 0.15
SVM RNA-class probability 0.606221
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5809393 99 - 23771897
CACAC-AA------AAGCCAUUUCGGACAAGUUGGAGUUGCAUUUUUAGCAGCAUUUUUGUUUUUCUGCGGCAUUUUAUUCGUCGCCGCUGGCUACAAAUUUGUGG--------------
..(((-((------((((((....(((((((.....(((((.......)))))...)))))))....(((((............)))))))))).....)))))).-------------- ( -28.40)
>DroPse_CAF1 18789 97 - 1
CAGAU-ACAGAUACGGCCCCGCUCAGACAAGUUGGAGUUGCAUUUUUAGCAGCAUUUU------UGUGCGGCAUUUUAUUCGUCGCCGCUGGCAACAAAUUUGU----------------
.....-((((((.....((.(((......))).)).(((((.....((((.((((...------.))))(((............))))))))))))..))))))---------------- ( -23.30)
>DroSec_CAF1 17332 99 - 1
CACAC-AA------AAGCCAUUUCGGACAAGUUGGAGUUGCAUUUUUAGCAGCAUUUUUGUUUUUGUGCGGCAUUUUAUUCAUCGCCGCUGGCUACAAAUUUGUGG--------------
..(((-((------((((((....(((((((.....(((((.......)))))...)))))))....(((((............)))))))))).....)))))).-------------- ( -28.40)
>DroEre_CAF1 17517 99 - 1
CACAC-AA------AAGCCAUUUCGGACAAGUUGGAGUUGCAUUUUUAGCAGCAUUUUUGUUUUUGUGCGGCAUUUUAUUCGUCGCCGCUGGCUACAAAUUUGUGG--------------
..(((-((------((((((....(((((((.....(((((.......)))))...)))))))....(((((............)))))))))).....)))))).-------------- ( -28.40)
>DroAna_CAF1 17578 108 - 1
CUCUCAAA------AAGCCAGCUCAAACAAGUUGAAGUUGCAUUUUUAGCAGCAUUUU------UGUGCGGCAUUUUAUUCGUCGCCGCUGGCUACAAAUUUGUGAUGUUGUUGCUGUUG
.((.((((------.(((((((....(((((.....(((((.......)))))...))------)))(((((.........))))).))))))).....)))).)).............. ( -27.60)
>DroPer_CAF1 18849 97 - 1
CAGAU-ACAGAUACGGCCCCGCUCAGACAAGUUGGAGUUGCAUUUUUAGCAGCAUUUU------UGUGCGGCAUUUUAUUCGUCGCCGCUGGCAACAAAUUUGU----------------
.....-((((((.....((.(((......))).)).(((((.....((((.((((...------.))))(((............))))))))))))..))))))---------------- ( -23.30)
>consensus
CACAC_AA______AAGCCAGCUCAGACAAGUUGGAGUUGCAUUUUUAGCAGCAUUUU______UGUGCGGCAUUUUAUUCGUCGCCGCUGGCUACAAAUUUGUGG______________
..........................(((((((...(((((.......)))))..............(((((............)))))........)))))))................ (-18.95 = -18.95 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:55 2006