Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,809,281 – 5,809,371 |
Length | 90 |
Max. P | 0.786438 |
Location | 5,809,281 – 5,809,371 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 80.23 |
Mean single sequence MFE | -27.17 |
Consensus MFE | -18.14 |
Energy contribution | -17.83 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.17 |
Mean z-score | -1.76 |
Structure conservation index | 0.67 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786438 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5809281 90 + 23771897 UAAAUAGCUUUUGGGGCACAAGGUGAAGCCG-AGAGGCUGGAAUUGGUGGCCAACCGGUGGCAGUGGCGACUCGAGAGUCGAGAUCCGAGA ........(((((((.(((..(((..((((.-...))))...))).((.(((....))).)).))).)..((((.....))))..)))))) ( -29.30) >DroPse_CAF1 18663 71 + 1 UAAAUAGCUUUUGGGGCACAAGGUGAAGCUG---AGGCUGAAGUUGGUGGCCAACCAGUGGCAGUGGCCACUA-----------------C ....(((((((.....(((...))).....)---))))))....(((((((((.((...))...)))))))))-----------------. ( -23.30) >DroSec_CAF1 17220 90 + 1 UAAAUAGCUUUUGGUGCACAAGGUGAAGCCG-AGAGGCUGGAAUUGGUGGCCAACCGGUGGCAGUGGCGACUCGAGAGUCGAGAUCCCAGA ......(((.(((((((.(((.....((((.-...))))....)))...))..))))).)))..(((.((((((.....)))).))))).. ( -30.60) >DroEre_CAF1 17412 83 + 1 UAAAUAGCUUUUGGGGCACAAGGUGAAGCCG-AGAGGCUGGAAUUGGUGGCCAACCGGUGGCAGUGGCGACUCGAGACUCGA-------GA ......(((.(((((((.(((.....((((.-...))))....)))...)))..)))).)))........((((.....)))-------). ( -27.60) >DroAna_CAF1 17466 75 + 1 UAAAUAGCUUUUGGGGCACAAGGUGAAGCUGUUGCCGCUGGAGUUGGUGGCCAACCAGUGGCAGUGGCCAUUCGA---------------- ......(((.....)))......((((((..((((((((((..((((...))))))))))))))..))..)))).---------------- ( -28.90) >DroPer_CAF1 18729 71 + 1 UAAAUAGCUUUUGGGGCACAAGGUGAAGCUG---AGGCUGAAGUUGGUGGCCAACCAGUGGCAGUGGCCACUA-----------------C ....(((((((.....(((...))).....)---))))))....(((((((((.((...))...)))))))))-----------------. ( -23.30) >consensus UAAAUAGCUUUUGGGGCACAAGGUGAAGCCG_AGAGGCUGGAAUUGGUGGCCAACCAGUGGCAGUGGCCACUCGA_______________A ......(((.(((((((.(((..(..((((.....)))).)..)))...)))..)))).)))............................. (-18.14 = -17.83 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:54 2006