Locus 2120

Sequence ID 3L_DroMel_CAF1
Location 5,808,419 – 5,808,522
Length 103
Max. P 0.751855
window3298

overview

Window 8

Location 5,808,419 – 5,808,522
Length 103
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 84.80
Mean single sequence MFE -30.88
Consensus MFE -22.58
Energy contribution -22.82
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.79
Structure conservation index 0.73
SVM decision value 0.48
SVM RNA-class probability 0.751855
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5808419 103 - 23771897
AAGAAGUUGCAAGUCGAAAAAGUCAUUAUAUGCGACAACCAAGUCGUCGAUAUUGGCAGCGACGCCAGCAGCACACUGAGAGAAAUGCGUCCAAGAAUCUUGA---------------
((((.(((((..((((.....((((.(((..(((((......)))))..))).))))..))))....)))))...((..((........))..))..))))..--------------- ( -24.90)
>DroSec_CAF1 16358 114 - 1
AAGAAGUUGCAAGUCGAAAAAGUCAUUAUAUGCGACAACCAAGUCGUCGAUAUUGGCAGCGACGCCAGCAGCACACUGAGAGUAAUGCGUCCUAGAAUCUGGACCGACAAU----AUA
.....(((((..((((.....((((.(((..(((((......)))))..))).))))..))))....))))).........(((.(((((((........))).)).)).)----)). ( -29.60)
>DroEre_CAF1 16564 116 - 1
AAGAAGUUGCAAGUCGAAAAAGUCAUUAUAUGCGACAACCAAGUCGUCGAUAUUGGCAGCGACGCCAGCUGCACACUGCGAGAAAUG--UACCAGAUUCUUGAGCAACUUCUAUGAGA
.(((((((((..((((.....((((.(((..(((((......)))))..))).))))..))))((.....))......((((((.((--...))..)))))).)))))))))...... ( -34.20)
>DroYak_CAF1 17170 118 - 1
AAGAAGUUGCAAGUCGAAAAAGUCAUUAUAUGCGACAACCAAGUCGUCGAUAUUGGCAGCGACGCGAGCAGCACACUGAGAGAAAUGUGUGCCACAUUUUUGAGCAACUACUGUGGGA
.((.((((((..((((.....((((.(((..(((((......)))))..))).))))..)))).......((((((..........))))))...........)))))).))...... ( -34.80)
>consensus
AAGAAGUUGCAAGUCGAAAAAGUCAUUAUAUGCGACAACCAAGUCGUCGAUAUUGGCAGCGACGCCAGCAGCACACUGAGAGAAAUGCGUCCCAGAAUCUUGAGCAACUAC____AGA
.....(((((..((((.....((((.(((..(((((......)))))..))).))))..))))....))))).............................................. (-22.58 = -22.82 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:50 2006