Locus 212

Sequence ID 3L_DroMel_CAF1
Location 586,314 – 586,416
Length 102
Max. P 0.538748
window312

overview

Window 2

Location 586,314 – 586,416
Length 102
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 88.18
Mean single sequence MFE -28.68
Consensus MFE -21.99
Energy contribution -22.18
Covariance contribution 0.19
Combinations/Pair 1.11
Mean z-score -1.42
Structure conservation index 0.77
SVM decision value 0.01
SVM RNA-class probability 0.538748
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 586314 102 + 23771897
UCUGGCCAGGGAAUACGUAUACCGUAUACUGAAUAUGUUGCAGUUGAUUCUGCUUUGCCAGCCGCUCUUUGCCGCAGUUCAAAAACCGUGGUUUAGAGUCUA
.((((((((...(((((.....))))).)))........((((......))))...)))))..(((((..(((((.(((....))).)))))..)))))... ( -33.10)
>DroSec_CAF1 3413 101 + 1
UAUGGACAGAGAAUACAUAUACCGUAUACUGAAUAUGUUGCAGUUCAUUCUGCUUCGGCAGCUGCUCU-UGCCGCAGUUCAAAAACCGUGGUUUAGAGUCUG
.((((((.(.....((((((.(.(....).).))))))..).)))))).((((....))))..(((((-.(((((.(((....))).)))))..)))))... ( -27.40)
>DroSim_CAF1 3403 101 + 1
UAUGGCCAGAGAAUACGUAUACCGUAUACUGAAUAUGUUGCAGUUGAUUCUGCUUUGGCAGCUGCUCU-UGCCGCAGUUCAAAAACCGUGGUUUAGAGUCUG
....((((((..(((((.....)))))............((((......))))))))))....(((((-.(((((.(((....))).)))))..)))))... ( -29.20)
>DroEre_CAF1 3528 94 + 1
UCUGGCUAGAGAAUA-------CGUAUACAGAAUAUGUUGCAGUUGAUUCUGCUUUGGCAGCUGCUCU-UGCCGCAGUUUGAAAACAGUGGUUCGGAGUCUG
....((((((....(-------(((((.....)))))).((((......))))))))))....(((((-.(((((.(((....))).)))))..)))))... ( -25.00)
>consensus
UAUGGCCAGAGAAUACGUAUACCGUAUACUGAAUAUGUUGCAGUUGAUUCUGCUUUGGCAGCUGCUCU_UGCCGCAGUUCAAAAACCGUGGUUUAGAGUCUG
....((((((............(((((.....)))))..((((......))))))))))....(((((..(((((.(((....))).)))))..)))))... (-21.99 = -22.18 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:24 2006