| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,807,915 – 5,808,014 |
| Length | 99 |
| Max. P | 0.993955 |
| Location | 5,807,915 – 5,808,014 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 66.77 |
| Mean single sequence MFE | -21.84 |
| Consensus MFE | -16.60 |
| Energy contribution | -16.60 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.76 |
| SVM decision value | 2.44 |
| SVM RNA-class probability | 0.993955 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5807915 99 + 23771897 CCCUUUA--------------CCGCAUCCCCACUUCAUCACCUCUUCGACC---CCCCUCCCCCCUGCCAUUCCAGAUGCAGUGCGUCUGGCGCGUUGUGCGGUAAAUACGCUUUA ...((((--------------((((((..(.......((........))..---............((....((((((((...)))))))).)))..))))))))))......... ( -24.80) >DroSec_CAF1 15815 105 + 1 CCCUCUUCCCCCCUCCCUCUUCCACAUCCCCAGUUCGCCGCCACUUCG-----------CCCCCCUGCCAUUCCAGAUGCAGUGCGUCUGGCGCGUUGUGCGGUAAAUACGCUUUA ................................(((..((((.((..((-----------(............((((((((...)))))))).)))..))))))..)))........ ( -23.72) >DroYak_CAF1 16632 80 + 1 CCCC------------------------------------CCUCUCCGGCCAUUCCCUCCCCCCCUGCCAUUCCAGAUGCAGUGCGUCUGGCGCGUUGUGCGGUAAAUACGCUUUA ....------------------------------------.......(((................)))...((((((((...)))))))).((((............)))).... ( -16.99) >consensus CCCU_U_______________CC_CAUCCCCA_UUC__C_CCUCUUCG_CC___CCC__CCCCCCUGCCAUUCCAGAUGCAGUGCGUCUGGCGCGUUGUGCGGUAAAUACGCUUUA .................................................................((((....(((((((...)))))))((((...))))))))........... (-16.60 = -16.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:49 2006