| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,803,810 – 5,803,901 |
| Length | 91 |
| Max. P | 0.911245 |
| Location | 5,803,810 – 5,803,901 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 73.68 |
| Mean single sequence MFE | -36.93 |
| Consensus MFE | -19.74 |
| Energy contribution | -20.19 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.53 |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.911245 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5803810 91 - 23771897 UCGGCAAGACUCUCUCUUGGGGGG--UU--GGAAAGUCUGAAGAGUCUAAGGAGUCUAGAGAGUCUGG---------------------AGCGUCCGGGGGAUUCAGCGGAGUCUG ..(((..(((((((.....)))))--))--......((((..((((((..(((((((((.....))))---------------------).).)))...))))))..))))))).. ( -30.80) >DroEre_CAF1 11975 93 - 1 UCGGGAAGACUCUC-UU-CGGGGGGCUUGGGGUAAGUCUGGAGAGUCUGGAGCAUCUAGAGAGUCU---------------------GGAGCGUCCGGGGGAUUCAGCGGAGUCUG (((((.((((((((-(.-....(((((((...))))))))))))))))...((.(((((.....))---------------------))))).))))).((((((....)))))). ( -35.10) >DroYak_CAF1 12486 110 - 1 CCGGGAAGACUCUC-UU-GGGGGG--UU--GGAAAGUCUGCAGAGUCUGGAGAUUCUAGAGAGUCUGAAGAGUCUAGGGAGUCUGCUGGAGCAUCCGGGGGAUUCAGCGGAGUCUG (((((.((((((((-(.-.(.((.--.(--....)..)).)(((.(((..((((((....))))))..))).))))))))))))((....)).))))).((((((....)))))). ( -44.90) >consensus UCGGGAAGACUCUC_UU_GGGGGG__UU__GGAAAGUCUGAAGAGUCUGGAGAAUCUAGAGAGUCUG____________________GGAGCGUCCGGGGGAUUCAGCGGAGUCUG (((((.((((((((................((.....))..(((.((....)).))).))))))))...........................))))).((((((....)))))). (-19.74 = -20.19 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:48 2006