| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,803,665 – 5,803,758 |
| Length | 93 |
| Max. P | 0.706003 |
| Location | 5,803,665 – 5,803,758 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 82.01 |
| Mean single sequence MFE | -25.42 |
| Consensus MFE | -14.83 |
| Energy contribution | -15.75 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.706003 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5803665 93 + 23771897 GAGGUGCG----GCUGCAUUUUCAAAUCAAAUUCAAAGUUGUUGCUGCC--GA-ACAUUUCCGCAGAUCAAAGUCACAGCUUGACAA-AUUCUGUGGAAA-A------ ...((.((----((.(((....(((.............))).))).)))--).-)).((((((((((.....((((.....))))..-..))))))))))-.------ ( -27.92) >DroPse_CAF1 12904 92 + 1 GAGGAGCG----GCUGCAUUUUCAAAUCAA-----AAAUUGUUGCUGCCCGAA-ACAUUUCCGCAGAUCAAAGUCACAGCUUGACAAAAUUCUGUGGAAAAA------ ..((.(((----((.(((.(((........-----))).))).)))))))...-...((((((((((.....((((.....)))).....))))))))))..------ ( -31.10) >DroGri_CAF1 17229 102 + 1 GUAGUCUGUAUGUACAUAUGUACAAAUCAAAUUCAAAGUUGUUGCUGCC--GAAACAUUUCCGCAGAUCAAAGUCACAGCUUGACAA-AUUCUGGAGAA---UCAGAG ...(((....(((((....)))))...........(((((((..((((.--(((....))).)))).........))))))))))..-..((((.....---.)))). ( -21.50) >DroMoj_CAF1 15772 94 + 1 GCUGCCCG----CCUGUGUUUUCAAAUCAAAUUCAAAGUUGUUGCUGCC--GA-ACAUUUCCGCAGAUCAAAGUCACAGCUUGACAAAAUUCUAUGGAAA-G------ ((.((.((----.((.((..((.......))..)).)).))..)).)).--..-...((((((.(((.....((((.....)))).....))).))))))-.------ ( -14.10) >DroAna_CAF1 12105 93 + 1 GAGGUGCG----GCUGCAUUUUCAAAUCAAAUUCAAAGUUGUUGCUGCC--GA-ACAUUUCCGCAGAUCAAAGUCACAGCUAGACAA-AUUCUGUGGAAA-A------ ...((.((----((.(((....(((.............))).))).)))--).-)).((((((((((.....(((.......)))..-..))))))))))-.------ ( -26.82) >DroPer_CAF1 12872 92 + 1 GAGGAGCG----GCUGCAUUUUCAAAUCAA-----AAAUUGUUGCUGCCCGAA-ACAUUUCCGCAGAUCAAAGUCACAGCUUGACAAAAUUCUGUGGAAAAA------ ..((.(((----((.(((.(((........-----))).))).)))))))...-...((((((((((.....((((.....)))).....))))))))))..------ ( -31.10) >consensus GAGGUGCG____GCUGCAUUUUCAAAUCAAAUUCAAAGUUGUUGCUGCC__GA_ACAUUUCCGCAGAUCAAAGUCACAGCUUGACAA_AUUCUGUGGAAA_A______ ((((((((......))))).)))..................................((((((((((.....((((.....)))).....))))))))))........ (-14.83 = -15.75 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:47 2006