Locus 2116

Sequence ID 3L_DroMel_CAF1
Location 5,798,213 – 5,798,305
Length 92
Max. P 0.512592
window3294

overview

Window 4

Location 5,798,213 – 5,798,305
Length 92
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 68.45
Mean single sequence MFE -25.72
Consensus MFE -8.41
Energy contribution -8.17
Covariance contribution -0.25
Combinations/Pair 1.38
Mean z-score -1.81
Structure conservation index 0.33
SVM decision value -0.04
SVM RNA-class probability 0.512592
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5798213 92 + 23771897
------UUGU-UUGUUUGUGCUGCCUGUGUUGUUUG----UGUUGUUUUCCCCCUUUUUGUUGGGGGCGUGUGAAUCCAAACAAUGCGGCAGUGAUAAAACCG
------....-..((((.(((((((.((((((((((----..(..(...(((((........)))))...)..)...)))))))))))))))))...)))).. ( -35.50)
>DroPse_CAF1 7558 82 + 1
UUCAUCUCG----------GUU--UUGUGUUAUUU-----UGUUGUUCU----CCUUUUGUUGGGGGCGUGUGAAUCCAAACAAUGCGGCAGUGAUAAAGCUG
.......((----------(((--((((......(-----((((((.((----(((......)))))..(((........)))..)))))))..))))))))) ( -16.20)
>DroSec_CAF1 6363 88 + 1
-----------UUGUUUGUGCUGCCUGUGUUGUUUG----UGUUGUUUUCCCUCUUUUUGUUGGGGGCGUGUGAAUCCAAACAAUGCGGCAGUGAUAAAGCCG
-----------..((((.(((((((.((((((((((----..(..(...(((((........)))))...)..)...)))))))))))))))))...)))).. ( -32.50)
>DroYak_CAF1 6617 84 + 1
UGCUGCCUGUGUUGUUUGUGUC-------------------GUUGCUUUCCCCCCUUCUGUUGGGGGCGUGUGAAUCCAAACAAUGCGGCAGUGAUAAAAACG
.((((((.((((((((((.(..-------------------.(..(...((((((.......))))).).)..)..))))))))))))))))).......... ( -34.80)
>DroAna_CAF1 6557 90 + 1
UGUUGCUUG----------GUC---UUUGGUUUUUGGACUUGGUCGGUUCUCCUUUUCCGUUGGGGGCGUGUGAAUUCAAACAAUGCGGCAGUGAUAAUAACG
((((((...----------(((---((..(....((((...((........))...)))))..)))))((.((....)).))...))))))............ ( -18.80)
>DroPer_CAF1 7537 82 + 1
UUCAUCUCG----------GUU--UUGUGUUAUUU-----UGUUGUUCU----CCUUUUGUUGGGGGCGUGUGAAUCCAAACAAUGCGGCAAUGAUAAAGCUG
.......((----------(((--((((......(-----((((((.((----(((......)))))..(((........)))..)))))))..))))))))) ( -16.50)
>consensus
U_C__CUUG__________GUU___UGUGUUAUUU_____UGUUGUUUUCCCCCCUUUUGUUGGGGGCGUGUGAAUCCAAACAAUGCGGCAGUGAUAAAACCG
...................(((.............................((((.......))))((((((........)).)))))))............. ( -8.41 =  -8.17 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:46 2006