Locus 2115

Sequence ID 3L_DroMel_CAF1
Location 5,797,427 – 5,797,532
Length 105
Max. P 0.721961
window3293

overview

Window 3

Location 5,797,427 – 5,797,532
Length 105
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 81.88
Mean single sequence MFE -22.08
Consensus MFE -15.30
Energy contribution -14.74
Covariance contribution -0.56
Combinations/Pair 1.33
Mean z-score -1.80
Structure conservation index 0.69
SVM decision value 0.40
SVM RNA-class probability 0.721961
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5797427 105 + 23771897
--------UUCUGUUCACAC--ACAGA---UUUCCCAAAAUAAAUAGUCUAGACAUCUUUGAGCGUUUCGAA--AAUUUGCUUGAUUCUAAACAGAUUUAUUUUAUGGCGAAUUUAUUUU
--------.(((((......--)))))---.((((((((((((((.((.((((.(((...(((((.......--....)))))))))))).))..))))))))..))).)))........ ( -19.10)
>DroSec_CAF1 5564 105 + 1
--------UUCUGUUCACAC--ACAGA---UUUCCCAAAAUAAAUAGUCUAGACAUCUUCGAGCGUUUCGAA--AAUUUGCUUGAUUCUUAACAGAUUUAUUUUAUGGCGAAUUUAUUUU
--------.(((((......--)))))---.((((((((((((((.((..(((.....(((((((.......--....))))))).)))..))..))))))))..))).)))........ ( -20.20)
>DroEre_CAF1 5322 107 + 1
--------UUCUGUUCACACACACAGA---UUUCCCAAAAUAAAUUGUCUAGACAUCUUCGAGCGUUUCGAA--AAUUCGCUUGAUUCUUAACAGAUUUAUUUUAUGGCGAAUUUAUUUU
--------.(((((........)))))---.(((((((((((((((((..(((.....(((((((.......--....))))))).)))..))).))))))))..))).)))........ ( -23.00)
>DroYak_CAF1 5739 118 + 1
GUUCGG--UUCUGUUCACACACACAGAGAUUUUCCCAAAAUAAAUUGUCUAGACAUCUUUGAGCGUUUCGAAAAAAUUCGCUUGAUUCUUAACAGAUUUAUUUUAUGGCGAAUUUAUUUU
(((((.--((((((........))))))......((((((((((((((..(((.(((...(((((.............)))))))))))..))).))))))))..))))))))....... ( -22.62)
>DroAna_CAF1 5840 108 + 1
GUUGGAUGUAUGAUUCCCAC--ACUGAA--AGUCCCGAAAUAGAUCGUCUAGACAUGUU-GAGCA-----GA--AAACUGCUUGAAUUUCAAAAGAUUUAUUUUAUGGCGGAUUUAUUUU
((.(((........))).))--.....(--((((((((((((((((.....((....(.-.((((-----(.--...)))))..)...))....))))))))))...).))))))..... ( -25.50)
>consensus
________UUCUGUUCACAC__ACAGA___UUUCCCAAAAUAAAUAGUCUAGACAUCUUCGAGCGUUUCGAA__AAUUUGCUUGAUUCUUAACAGAUUUAUUUUAUGGCGAAUUUAUUUU
.........(((((........)))))....(((((((((((((((....(((.....(((((((.............))))))).))).....)))))))))..))).)))........ (-15.30 = -14.74 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:45 2006