Locus 211

Sequence ID 3L_DroMel_CAF1
Location 582,209 – 582,321
Length 112
Max. P 0.736493
window311

overview

Window 1

Location 582,209 – 582,321
Length 112
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 91.65
Mean single sequence MFE -26.46
Consensus MFE -22.26
Energy contribution -22.06
Covariance contribution -0.20
Combinations/Pair 1.11
Mean z-score -1.42
Structure conservation index 0.84
SVM decision value 0.44
SVM RNA-class probability 0.736493
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 582209 112 + 23771897
UAAGAGUACACAGAACACCCUCUACUCUGGGGUGAGUCGAUUUGGAAUCUCAAAAAUCGUAGCAAAAAAAAGUAAACCAUGAUCAGUUUUGAAGUUUGCCAAAACUGCUCAU
......(((......((((((.......)))))).((((((((..........))))))..))........)))....((((.((((((((........)))))))).)))) ( -25.10)
>DroSec_CAF1 13574 111 + 1
UAAGAGUACACAGAACACCCUCUACUCUGGGGUGAGUCGAUUUGGAAUCUCAAAAAUCGUAGCUAA-AAAAGUAAUCCAUGAUCAGUUUUGAAGUUUGCCAAAACUGCUCAU
...((.(((......((((((.......))))))(((((((((..........))))))..)))..-....))).)).((((.((((((((........)))))))).)))) ( -27.10)
>DroSim_CAF1 14245 111 + 1
UAAGAGUACACAGAACACCCUCUACUCUGGGGUGAGUCGAUUUGGAAUCUCAAAAAUCGUAGCUAA-AAAAGUAAUCCAUGAGAAGUUUUGAAGUCUGCCAAAAAUGCUCAU
...(((((....((.((((((.......))))))..))..(((((.(..((((((.((((.(((..-...))).....))))....))))))..)...)))))..))))).. ( -23.90)
>DroEre_CAF1 13479 111 + 1
UAAGCGUACACAGAACACCCUCUGCUCUGGGGUGAGUCGAUUUGGAAUCUCAAAAAUCGUAGCAAA-AAAAGUGAUCCAUGAUCAGUUUCGAGGUUUUCCAAAACUGCGCAU
...(((((....((.((((((.......))))))..))..(((((((((((.......(...)...-.(((.(((((...))))).))).)))))..))))))..))))).. ( -27.60)
>DroYak_CAF1 5589 111 + 1
UAAGCGUACACAGAACACCCUCUGCUCUGGGGUGAGUCGAUUUGGAAUCUCAAAAGUCGUAGCAAA-CGAAGUAAUCCAUAAGCAGUUUUGAAGCUUCGCAAAACUGCGCAU
...((.(((......((((((.......)))))).((((((((..........))))))..))...-....)))........(((((((((........))))))))))).. ( -28.60)
>consensus
UAAGAGUACACAGAACACCCUCUACUCUGGGGUGAGUCGAUUUGGAAUCUCAAAAAUCGUAGCAAA_AAAAGUAAUCCAUGAUCAGUUUUGAAGUUUGCCAAAACUGCUCAU
...((((((......((((((.......)))))).((((((((..........))))))..))........))).........((((((((........))))))))))).. (-22.26 = -22.06 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:21 2006