| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,771,095 – 5,771,209 |
| Length | 114 |
| Max. P | 0.650547 |
| Location | 5,771,095 – 5,771,209 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.76 |
| Mean single sequence MFE | -24.31 |
| Consensus MFE | -20.03 |
| Energy contribution | -19.59 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.650547 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5771095 114 - 23771897 UUCUAUUUAUGCUAGUGCCCUUUUUACGCUGCUCUUUCAAAUGC------CAAUCAUCGACGUUUCUUUAUUUUUAGCCAUUUCCCACCUGGGCACGCAAAUGGCAAUUGAUUAGCAUAA ..........((.((((.........))))))........((((------.(((((..((....))..........((((((((((....))).....)))))))...))))).)))).. ( -22.20) >DroSec_CAF1 13690 119 - 1 UUCUAUUUAUGCUAGUGCCCUUCUUACCCUGCCAUUUCAAAUGGCAAAACCAAUCAUCGACGUUUCUUUAUUUUUAGCCA-UUCCCACCUGGGCACGCAAAUGGCAAUUGAUUAGCAUAA ......((((((((((.............((((((.....))))))..............................((((-(((((....)))......)))))).....)))))))))) ( -27.60) >DroSim_CAF1 13553 119 - 1 UUCUAUUUAUGCUAGUGCCCUUCUUACGCUGCCAUUUCAAAUGCCAAAACCAAUCAUCGACGUUUCUUUAUUUUUAGCCU-UUCCCACCUGGGCACGCAAAUGGCAAUUGAUUAGCAUAA ......((((((((((((.........))((((((((((((((.(.............).)))))...........((((-.........))))..).))))))))....)))))))))) ( -23.12) >consensus UUCUAUUUAUGCUAGUGCCCUUCUUACGCUGCCAUUUCAAAUGCCAAAACCAAUCAUCGACGUUUCUUUAUUUUUAGCCA_UUCCCACCUGGGCACGCAAAUGGCAAUUGAUUAGCAUAA ......((((((((((((((.......((.............))..............((....))........................))))))((.....)).......)))))))) (-20.03 = -19.59 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:31 2006