| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,769,142 – 5,769,262 |
| Length | 120 |
| Max. P | 0.933243 |
| Location | 5,769,142 – 5,769,262 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.11 |
| Mean single sequence MFE | -30.83 |
| Consensus MFE | -28.07 |
| Energy contribution | -28.40 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.933243 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5769142 120 + 23771897 AGGUCGAUUUGAGUGGUUGUAAAUAAAUCACUUAAUUCCAAUGCACUAAAAUAGACUCAGGACAACUCUAUCCCAUAUCACCAAGGAAACUGCGGUUUCAUUGUUAGGUUUGACCUUCCU (((((((.((((((((((.......)))))))))).))(((((..........((....(((........)))....))(((.((....))..)))..)))))........))))).... ( -28.30) >DroSec_CAF1 11740 120 + 1 AGGUCGAUUUGAGUGGUUGCAAAUAAAUCACUUAAUUCCAAUGUACUAAAAUAGUCCCAGGACAACUCUUUCCAAUAUCACCUAGGAAACUGCGGUUUCAUUGUUAGGUUUGACCUUCCU (((((((.((((((((((.......)))))))))).))...............(((....)))....(((..((((...((((((....))).)))...))))..)))...))))).... ( -32.10) >DroSim_CAF1 11611 120 + 1 AGGUCGAUUUGAGUGGUUGCAAAUAAAUCACUUAAUUCCAAUGCACUAAAAUAGUCCCAGGACAACUCUUUCCAAUAUCACCUAGGAAACUGCGGUUUCAUUGUUAGGUUUGACCUUCCU (((((((.((((((((((.......)))))))))).))...............(((....)))....(((..((((...((((((....))).)))...))))..)))...))))).... ( -32.10) >consensus AGGUCGAUUUGAGUGGUUGCAAAUAAAUCACUUAAUUCCAAUGCACUAAAAUAGUCCCAGGACAACUCUUUCCAAUAUCACCUAGGAAACUGCGGUUUCAUUGUUAGGUUUGACCUUCCU (((((((.((((((((((.......)))))))))).))(((((................(((........)))......((((((....))).)))..)))))........))))).... (-28.07 = -28.40 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:30 2006