Locus 2103

Sequence ID 3L_DroMel_CAF1
Location 5,763,137 – 5,763,239
Length 102
Max. P 0.992351
window3272

overview

Window 2

Location 5,763,137 – 5,763,239
Length 102
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 93.88
Mean single sequence MFE -28.23
Consensus MFE -27.90
Energy contribution -27.77
Covariance contribution -0.12
Combinations/Pair 1.07
Mean z-score -2.37
Structure conservation index 0.99
SVM decision value 2.32
SVM RNA-class probability 0.992351
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5763137 102 + 23771897
UUGAUACUGGCGCAGUUACCACGAGCCCACUUGACCACUUGCCAAAGGUAAAUAAAUUCUUGGCUCACUUUUGGUCGCCGAAUUGCGUCAGCUGUUAAUUAU
(((((((((((((((((.....(((....)))(((((...(((((..((......))..))))).......)))))....))))))))))).)))))).... ( -32.10)
>DroSec_CAF1 5676 94 + 1
UUGAUACUGGCGCAGUUACCACGAGCCCACU--------UGCCCAAGGUAAAUAAAUUCUUGGCUCACUUUUGGUCGCCGAAUUGCGUCAGCUGUUAAUUAU
(((((((((((((((((....(((.((....--------((.((((((.........))))))..)).....)))))...))))))))))).)))))).... ( -28.20)
>DroSim_CAF1 5514 94 + 1
UUGAUACUGGCGCAGUUACCACGAGCCCACU--------UGCCCAAGGUAAAUAAAUUCUUGGCUCACUUUUGGUCGCCGAAUUGCGUCAGCUGUUAAUUAU
(((((((((((((((((....(((.((....--------((.((((((.........))))))..)).....)))))...))))))))))).)))))).... ( -28.20)
>DroEre_CAF1 5616 94 + 1
UUGAUACUGGCGCAGUUGCCACGAGCCCACU--------UGCCCAAGGUAAAUAAAUUCUUGGCUUACUUUUGGUCGCCGAAUUGCGUCAACUGUUAAUUAU
((((((.((((((((((((((.(((.....(--------((((...))))).....))).)))).......(((...)))))))))))))..)))))).... ( -24.40)
>consensus
UUGAUACUGGCGCAGUUACCACGAGCCCACU________UGCCCAAGGUAAAUAAAUUCUUGGCUCACUUUUGGUCGCCGAAUUGCGUCAGCUGUUAAUUAU
(((((((((((((((((((((.(((((............((((...))))...........))))).....)))).....))))))))))).)))))).... (-27.90 = -27.77 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:25 2006