Locus 2102

Sequence ID 3L_DroMel_CAF1
Location 5,762,988 – 5,763,095
Length 107
Max. P 0.939240
window3271

overview

Window 1

Location 5,762,988 – 5,763,095
Length 107
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 79.09
Mean single sequence MFE -26.62
Consensus MFE -10.89
Energy contribution -11.97
Covariance contribution 1.08
Combinations/Pair 1.15
Mean z-score -2.48
Structure conservation index 0.41
SVM decision value 1.28
SVM RNA-class probability 0.939240
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5762988 107 + 23771897
UCUUGAUCCGCCGAAAAUGGCAGA-------CGUUUGAUUUCGU--ACAAAAAUUUGCAUAUCAUUU--UUGG-UGAUUUACAGAACA-AUAAUUUAUCAUCAAAGUCUUUUUAGGGCAU
((((((..((((((((((((((((-------..((((.......--.))))..)))))....)))))--))))-))..))).)))...-................((((.....)))).. ( -24.20)
>DroSec_CAF1 5529 106 + 1
UCUUGAUCCGCCAAAAAUGGCAGA-------UGUUUGAUUUCGU---UAAAAAUUUGCAUAUCAUUU--UUGG-GGAUUUAAAGAACA-AUAAUUUAUCAUCUAAGCUUUUUUAGGGCAU
(((((((((.((((((((((((((-------(.((((((...))---)))).))))))....)))))--))))-)))))..))))...-................((((.....)))).. ( -27.10)
>DroSim_CAF1 5367 106 + 1
UCUUGAUCCGCCAAAAAUGGCAGA-------UGUUUGAUUUCGU---UAAAAAUUUGCAUAUCAUUU--UUGG-GGAUUUACAGAACA-AUAAUUUAUCAUCUAAGCCUUUUUAGGGCAU
(((.(((((.((((((((((((((-------(.((((((...))---)))).))))))....)))))--))))-)))))...)))...-................((((.....)))).. ( -29.40)
>DroEre_CAF1 5484 91 + 1
UCUUGAUCCACCGAAAAUGGCAGA-------C-------------------AAUUUGCAUAUCAUUU--UUGGGGGACUUACAGAACA-AUAAUUUAUCAUCUAAGCCUUUUUAGGGCAU
(((((((((.((((((((((((((-------.-------------------..)))))....)))))--)))).))).))).)))...-................((((.....)))).. ( -22.00)
>DroAna_CAF1 6202 119 + 1
UCUUGUGCCACCGUAAAUGGCUGGGGUCAGGUUUUUGGGUUUGAUUGGGAAAAUUUGCAUAUAAUUUUUUUGG-UGAUUUACAGAGAACAUAAUUUAUCAUCUCUGCCGUUUUAGGGCAU
....(((((.....(((((((.(((((...((((((..((.(.((..((((((((.......))))))))..)-).)...)).))))))..........))))).)))))))...))))) ( -30.42)
>consensus
UCUUGAUCCGCCGAAAAUGGCAGA_______UGUUUGAUUUCGU___UAAAAAUUUGCAUAUCAUUU__UUGG_GGAUUUACAGAACA_AUAAUUUAUCAUCUAAGCCUUUUUAGGGCAU
(((.(((((.((((((((((((((.............................)))))....)))))..)))).)))))...)))....................((((.....)))).. (-10.89 = -11.97 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:24 2006