Locus 2101

Sequence ID 3L_DroMel_CAF1
Location 5,762,781 – 5,762,871
Length 90
Max. P 0.605436
window3270

overview

Window 0

Location 5,762,781 – 5,762,871
Length 90
Sequences 3
Columns 90
Reading direction forward
Mean pairwise identity 89.26
Mean single sequence MFE -22.83
Consensus MFE -20.82
Energy contribution -20.93
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -1.50
Structure conservation index 0.91
SVM decision value 0.15
SVM RNA-class probability 0.605436
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5762781 90 + 23771897
CAAACAAGUCUCACUGCCCACAAGAUUUUACGGUGCUUUUGUGAUUUUGGUCUUAGCCAUAAUUAACAGCGAAGAAAAUCAGCGGCAGGG
.............(((((.....((((((.(..((((....(((((.((((....)))).)))))..))))..)))))))...))))).. ( -23.30)
>DroSim_CAF1 5179 90 + 1
CAAACAAGCCUCGCUGCCCACAAGAUUUUACGGUGCUUUUGUGAUUUUGGUCUUAGCCAUAAUUAACAGCGAAGAAAAUCAGCGGCAGGG
........(((.(((((......((((((.(..((((....(((((.((((....)))).)))))..))))..))))))).)))))))). ( -24.70)
>DroEre_CAF1 5305 85 + 1
CAAA----ACUGACUGCCCACAAGAUUUUACGCAGCU-UUGUGAUUUUGGGCUUAACCAUAAUUAACAGCGAAGAAAAUCAGCGGUAGGA
....----.....(((((.....((((((.(...(((-...(((((.(((......))).)))))..)))...)))))))...))))).. ( -20.50)
>consensus
CAAACAAGACUCACUGCCCACAAGAUUUUACGGUGCUUUUGUGAUUUUGGUCUUAGCCAUAAUUAACAGCGAAGAAAAUCAGCGGCAGGG
.............(((((.....((((((....((((....(((((.(((......))).)))))..))))...))))))...))))).. (-20.82 = -20.93 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:23 2006