Locus 210

Sequence ID 3L_DroMel_CAF1
Location 575,925 – 576,023
Length 98
Max. P 0.988210
window310

overview

Window 0

Location 575,925 – 576,023
Length 98
Sequences 3
Columns 98
Reading direction reverse
Mean pairwise identity 97.28
Mean single sequence MFE -22.23
Consensus MFE -21.32
Energy contribution -21.10
Covariance contribution -0.22
Combinations/Pair 1.07
Mean z-score -3.68
Structure conservation index 0.96
SVM decision value 2.11
SVM RNA-class probability 0.988210
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 575925 98 - 23771897
AUCCCCAAUAAACAGCCACUGAUUCAAGUGGCGGCACAUGCCAACCCUCCGUCUCUAUCCUCACCCACCAAAAAACACAUUCGUUUGGGCCUUGCAAA
...(((((......((((((......))))))(((....)))..........................................)))))......... ( -21.90)
>DroSec_CAF1 7332 98 - 1
AUCUCCAAUAAACAGCCACUGAUUCAAGUGGCGGCACAUGCCAACCCUCCGUCUCCAUCCCCGCCCACCAAAAAACACAUUCGUUUGGGCCUUGCAAA
..............((((((......))))))(((....)))....................(((((......(((......))))))))........ ( -22.90)
>DroSim_CAF1 7936 98 - 1
AUCCCCAAUAAACAGCCACUGAUUCAAGUGGCGGCACAUGCCAACCCUCCGUCUCCAUCCCCACCCACCAAAAAACACAUUCGUUUGGGCCUUGCAAA
...(((((......((((((......))))))(((....)))..........................................)))))......... ( -21.90)
>consensus
AUCCCCAAUAAACAGCCACUGAUUCAAGUGGCGGCACAUGCCAACCCUCCGUCUCCAUCCCCACCCACCAAAAAACACAUUCGUUUGGGCCUUGCAAA
...(((((......((((((......))))))(((....)))..........................................)))))......... (-21.32 = -21.10 +  -0.22) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:16 2006