| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 73,398 – 73,489 |
| Length | 91 |
| Max. P | 0.783318 |
| Location | 73,398 – 73,489 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 87.53 |
| Mean single sequence MFE | -34.81 |
| Consensus MFE | -25.58 |
| Energy contribution | -25.38 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.783318 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 73398 91 + 23771897 UCAUGCUUGCCGACGCA----GGAUGCCAAGAGUAGCAGCUGCGUGAGCCAGCUGGCGGGGAAUGUGAUUGGCAUAUAAAAAGUCGCAUUCGGAC .....((((((.(((((----(..(((........))).)))))).((....))))))))((((((((((...........)))))))))).... ( -32.20) >DroSec_CAF1 23498 91 + 1 CACUGCCUGCCGACGCA----GGAUGCUAAGAGUAGCAGCUGCGUGAGUCAGCUGGCGGGGAAUGUGAUCGGCAUACAAAAUGUCGCAUUCGGAC .....((((((.(((((----(..(((((....))))).)))))).((....))))))))(((((((((.............))))))))).... ( -35.32) >DroSim_CAF1 24407 91 + 1 CACUGCCUGCCGACGCA----GGAUGCUAAGAGUAGAAGCUGCGUGAGUCAGCUGGCGGGGAAUGUGAUCGGCAUACAAAAUGUCGCAUUCGGAC .....((((((...((.----....))..........((((((....).)))))))))))(((((((((.............))))))))).... ( -31.72) >DroEre_CAF1 30117 95 + 1 CCAUGGCUGCCGACGCAGUUCGGAUGCGAAAAGCAGCAGCUGCGUGAGUCAGCUGCCGUGGAAUGUGAUUGGCAUACAAAAUGUCGCAUGCGGAC .....(((((....)))))(((.((((((...((.((((((((....).))))))).)).(.((((.....)))).)......)))))).))).. ( -36.10) >DroYak_CAF1 31578 95 + 1 CUAUGGCUGCCAACGCAGUCCGGAUGCGAAAAGCAGCAGCUGCGUGAGUCAGCUGCCGUGGAAUGUGAUUGGCAUACAAAAUGUCGCAUGCGGAC ...((..((((((((((.((((..(((.....)))((((((((....).)))))))..)))).)))).))))))..)).....(((....))).. ( -38.70) >consensus CAAUGCCUGCCGACGCA____GGAUGCGAAGAGUAGCAGCUGCGUGAGUCAGCUGGCGGGGAAUGUGAUUGGCAUACAAAAUGUCGCAUUCGGAC ..(((((.((.((((((.......))).....((((...))))....))).)).))))).(((((((((.............))))))))).... (-25.58 = -25.38 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:04 2006