Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,761,817 – 5,761,919 |
Length | 102 |
Max. P | 0.986905 |
Location | 5,761,817 – 5,761,919 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 79.07 |
Mean single sequence MFE | -25.40 |
Consensus MFE | -18.61 |
Energy contribution | -20.50 |
Covariance contribution | 1.89 |
Combinations/Pair | 1.08 |
Mean z-score | -2.36 |
Structure conservation index | 0.73 |
SVM decision value | 2.06 |
SVM RNA-class probability | 0.986905 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5761817 102 - 23771897 ------------CUCUUAAUCCACAUAGCCAAAUGCUAAUGAAAUGGAGUUUUUCACUUAACCACCAAGGUUGCGAAGGGAAAUCUUUCUCAAGCGGCCUUCUCUCUGCUAUCA- ------------.......((((((((((.....))).)))...))))..................((((((((...(((((....)))))..)))))))).............- ( -20.50) >DroSec_CAF1 4360 105 - 1 ACAAUUGAUGGUCCACCUAUCCACAUAGCCAAAUGCUAAUGAAAC---------CAC-CAACCACCAAGGUUGCGAAGGGGAAUCUAUCUCAAGCGACCUUCUCUCCGCCAUCAA ....((((((((...........((((((.....))).)))....---------...-........((((((((....((((.....))))..))))))))......)))))))) ( -26.90) >DroSim_CAF1 4155 114 - 1 ACAAAUGAUGGUCCACCCAUCCACAUAGCCAAAUGCUAAUGAAAUGGAGUUUUUCACUUAACCACCAAGGUUGCGAAGGGAAAUCUAUCUCAAGCGGCCUUCUCUCCGCCAUCA- .....(((((((..((((((...((((((.....))).)))..)))).))................((((((((...((((......))))..))))))))......)))))))- ( -28.80) >consensus ACAA_UGAUGGUCCACCAAUCCACAUAGCCAAAUGCUAAUGAAAUGGAGUUUUUCACUUAACCACCAAGGUUGCGAAGGGAAAUCUAUCUCAAGCGGCCUUCUCUCCGCCAUCA_ .....(((((((...........((((((.....))).))).........................((((((((...((((......))))..))))))))......))))))). (-18.61 = -20.50 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:19 2006