Locus 2097

Sequence ID 3L_DroMel_CAF1
Location 5,760,524 – 5,760,637
Length 113
Max. P 0.703049
window3263

overview

Window 3

Location 5,760,524 – 5,760,637
Length 113
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 91.12
Mean single sequence MFE -40.45
Consensus MFE -34.06
Energy contribution -35.00
Covariance contribution 0.94
Combinations/Pair 1.08
Mean z-score -1.60
Structure conservation index 0.84
SVM decision value 0.36
SVM RNA-class probability 0.703049
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5760524 113 - 23771897
UUUCUAGACGAGGCCUCUCCAGCCAGCGUCAUUCGUUGUUUGGACCUCGCGUUGUUCGGACGUACAUACAUUUCGAUCGGCGCGUCGUCUCACGAAGAUCG----UUUGGCCUAGCU
......(((((((....(((((.(((((.....))))).)))))))))((((((.(((((.((....))..))))).)))))))))(((..(((.....))----)..)))...... ( -38.30)
>DroSec_CAF1 3080 117 - 1
UUGCUAGACGAGGCCUCUCCAGCCAGAGUCAUUCGUUGUUUGGACCUCGCGUUGCUUGGACGUACAUACAUUUCGAUCGGCGCGUCGUCUCUCGAAGAUCGUCCGUCUGGCACAGCU
.(((((((((.(((((((......))))((.((((......((((..(((((((.(((((.((....))..))))).)))))))..))))..))))))..))))))))))))..... ( -40.40)
>DroSim_CAF1 2853 117 - 1
UUGCUAGACGAGGCCUCCCCAGCCAGCGUCAUUCGUUGUUUGGACCUCGCGUUGCUUGGACGUACAUACAUUUCGAUCGGCGCGUCGUCUCUCGAAGAUCGUCCGUCUGGCAUAGCU
.(((((((((.(((.....(((.(((((.....))))).)))(((..(((((((.(((((.((....))..))))).)))))))..)))...........))))))))))))..... ( -41.70)
>DroEre_CAF1 3103 109 - 1
UUGCUAGACGAGGCCUCUCCAGCCAGCGCCAUUCGUUGUUUGGACCUCGCGUUGCUUGGACGUA----CAUUUCAAUCGGCGCGUCGUCUCUCGAAGAUCG----UCUGGCACAGCU
.(((((((((((((((........)).))).((((......((((..(((((((.(((((....----...))))).)))))))..))))..))))..)))----)))))))..... ( -41.40)
>consensus
UUGCUAGACGAGGCCUCUCCAGCCAGCGUCAUUCGUUGUUUGGACCUCGCGUUGCUUGGACGUACAUACAUUUCGAUCGGCGCGUCGUCUCUCGAAGAUCG____UCUGGCACAGCU
.(((((((((((((...(((((.(((((.....))))).)))))...(((((((.(((((...........))))).)))))))..))))).((.....))...))))))))..... (-34.06 = -35.00 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:17 2006