Locus 2096

Sequence ID 3L_DroMel_CAF1
Location 5,759,987 – 5,760,084
Length 97
Max. P 0.540522
window3262

overview

Window 2

Location 5,759,987 – 5,760,084
Length 97
Sequences 4
Columns 97
Reading direction forward
Mean pairwise identity 84.63
Mean single sequence MFE -22.07
Consensus MFE -16.69
Energy contribution -17.62
Covariance contribution 0.94
Combinations/Pair 1.23
Mean z-score -1.46
Structure conservation index 0.76
SVM decision value 0.01
SVM RNA-class probability 0.540522
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5759987 97 + 23771897
UUUUUCAAAGCCAGCACACAAUUGCAAAUCCAUUUUUGAUCAAAAGGGUUAAUUGGAUUUUGAUACAUUUUGAUACAUUUUGAUUGCUUUUUGAUUG
....(((((((..(((......)))(((((((...((((((.....)))))).))))))).........................)))..))))... ( -15.60)
>DroSec_CAF1 2520 96 + 1
UUUUUCAAAGGCAGCACACAAUUGCAAGUCCAUUUUUGAGCAAAAAGGUUAAUUGGAUUUUGAUACAUCUUGCAGUAG-UUGAUUACCAUUCGAUUG
..........((((((......)))(((((((...((((.(.....).)))).)))))))..........)))..(((-((((.......))))))) ( -16.30)
>DroSim_CAF1 2291 96 + 1
UUUUUCAAAGGCAGCACACAAUUGCAAGUCCAUUUUUGACCAAAAAGGUUAAUUGGAUUUUGAUACAUCUUGCAGUAG-UUGAUUGCCUUUUGAUGG
....((((((((((((.((.((((((((((((...((((((.....)))))).))))...........)))))))).)-))).))))).)))))... ( -30.10)
>DroEre_CAF1 2593 94 + 1
UUUUCCAAAGGCAGCACUCAAUUGCGAAUCCAACUCGGGCCAA--AGGCUAAUUGGAUUUUGAUACAUCUUGCAGUGG-UUGAUUGCUUUUUGAUGG
....(((.(((.((((.(((((..(((((((((....((((..--.))))..)))))))).((....)).....)..)-)))).)))).)))..))) ( -26.30)
>consensus
UUUUUCAAAGGCAGCACACAAUUGCAAAUCCAUUUUUGACCAAAAAGGUUAAUUGGAUUUUGAUACAUCUUGCAGUAG_UUGAUUGCCUUUUGAUGG
...((.((((((((((....((((((((((((...((((((.....)))))).))))...........))))))))....)).)))))))).))... (-16.69 = -17.62 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:16 2006