Locus 2095

Sequence ID 3L_DroMel_CAF1
Location 5,759,015 – 5,759,112
Length 97
Max. P 0.703627
window3261

overview

Window 1

Location 5,759,015 – 5,759,112
Length 97
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 71.15
Mean single sequence MFE -18.87
Consensus MFE -4.88
Energy contribution -5.52
Covariance contribution 0.64
Combinations/Pair 1.10
Mean z-score -1.78
Structure conservation index 0.26
SVM decision value 0.36
SVM RNA-class probability 0.703627
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5759015 97 + 23771897
--------UUCACUUCUUUGUUGUUA---GG-----GGAACCAUA-AAGCGACCACCAAAUGCCAUUAUGGUCGCAUAUAAAACAUGUAUGGAUG--GCA---AAA-AGACUGAAAAAGA
--------(((((((.(((((..((.---((-----....))...-..(((((((.............)))))))................))..--)))---)))-))..))))..... ( -23.22)
>DroSec_CAF1 1579 96 + 1
--------UUCACUUCUUUGUUGUUA---GG-----GGAACCAUA-AAGCGACCACCAAAUGCCAUUAUGGCCGCACAUAAAAUAUGUAUGGCAAAAAAA-------AACCAAAAAAAGA
--------......(((((((((((.---((-----....))...-.)))))).................((((.(((((...))))).)))).......-------........))))) ( -16.90)
>DroSim_CAF1 1340 99 + 1
--------UUCACUUCUUUGUUGUUA---GA-----GGAAACAUA-AAGCGACCACCAAAUGCCAUUAUGGCCGCACAUAAAAUAUGUAUGGCAAAAAAA---AAA-AAACCAAAAAAGA
--------......(((((((((((.---.(-----(....).).-.)))))).................((((.(((((...))))).)))).......---...-........))))) ( -15.70)
>DroEre_CAF1 1612 92 + 1
--------UUCACUUCUUUGUUGUCA---GG-----GGACCUGCCAAACCG---ACCAAAUGCCAUUAUGGCCACACAUAAAAUAU----GGCAAAAAGAC--AAAAAACCAGA---AAA
--------.....((((...(((((.---.(-----(......))......---......((((((((((......))))....))----))))....)))--))......)))---).. ( -17.00)
>DroAna_CAF1 1597 110 + 1
GUUUCUUAUUCAGCUCUUUGUUGUCAUCUGGGGCCAGUAUCCAUA-AAGCCA----CAAAUGCCAUUAUGGACACACAUAAAAGAU----GGCAAAAAAAUCCAAA-AAAAAAAAAGCGA
............(((.(((.(((((((((.......((.((((((-(.((..----.....))..))))))).)).......))))----)))))...........-....))).))).. ( -21.53)
>consensus
________UUCACUUCUUUGUUGUUA___GG_____GGAACCAUA_AAGCGACCACCAAAUGCCAUUAUGGCCGCACAUAAAAUAUGUAUGGCAAAAAAA___AAA_AAACAAAAAAAGA
............................................................((((((((((......)))))........))))).......................... ( -4.88 =  -5.52 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:15 2006